View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20199_low_3 (Length: 552)
Name: NF20199_low_3
Description: NF20199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20199_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Complemental strand, 51112971 - 51112452
Alignment:
| Q |
11 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
110 |
Q |
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| T |
51112971 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
51112872 |
T |
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| Q |
111 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
210 |
Q |
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| T |
51112871 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
51112772 |
T |
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| Q |
211 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaa |
310 |
Q |
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| T |
51112771 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaa |
51112672 |
T |
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| Q |
311 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaagg |
410 |
Q |
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| T |
51112671 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaagg |
51112572 |
T |
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| Q |
411 |
ccaaagaatatgctactaatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgc |
510 |
Q |
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| T |
51112571 |
ccaaagaatatgctactgatgctgctcagaaggctgcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgc |
51112472 |
T |
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| Q |
511 |
tgcacaaaagaccaaagagt |
530 |
Q |
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| T |
51112471 |
tgcacaaaaaaccaaagagt |
51112452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 528
Target Start/End: Complemental strand, 51112096 - 51112028
Alignment:
| Q |
460 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaaga |
528 |
Q |
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| T |
51112096 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 516
Target Start/End: Complemental strand, 51112360 - 51112301
Alignment:
| Q |
457 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
516 |
Q |
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| T |
51112360 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
51112301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 529
Target Start/End: Complemental strand, 51111939 - 51111874
Alignment:
| Q |
464 |
tatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagag |
529 |
Q |
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| T |
51111939 |
tatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
51111874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Complemental strand, 51112460 - 51112419
Alignment:
| Q |
489 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagt |
530 |
Q |
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| T |
51112460 |
ccaaagagtatgcaggtgatgctacagagaagaccaaagagt |
51112419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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