View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20199_low_4 (Length: 545)
Name: NF20199_low_4
Description: NF20199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20199_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 530
Target Start/End: Original strand, 1492879 - 1493388
Alignment:
| Q |
17 |
agtatcaccacacttcaagagcttccacttcaacctcatcacacaaattaattaatgtgaccatcacagtgagtgctatgtcagatattctcaaagttca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492879 |
agtatcaccacacttcaagagcttccacttcaacctcatcacacaaattaat----gtgaccatcacagtgagtgctatgtcagatattctcaaagttca |
1492974 |
T |
|
| Q |
117 |
caacactttttcaatcagcaatttggcttgtagtgtagttattttccttctattgtttcttctgtatatttaaatactaagcatgcaatcaccaaactga |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1492975 |
caacactttttcaatcagcattttggcttgtagtgtagttattttccttctattgtttcctgtgtatatttaaatactaagcatgcaatcaccaaactga |
1493074 |
T |
|
| Q |
217 |
gcctaatatttcagacactatagaacnnnnnnnnnnnnnnnntccaagaaatgggttctctcagcttcctcaccttccttgttaacctgtttcttttgca |
316 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493075 |
gcctaatatttcagacactatagaccaaaaacaaaaaaaaaatccaagaaatgggttctctcagcttcctcaccttccttgttaacctgtttcttttgca |
1493174 |
T |
|
| Q |
317 |
gctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaatagtaaaaaatgcagttgagatgaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1493175 |
gctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatgttgaatcaatagtcaaaaatgcagttgagatgaaa |
1493274 |
T |
|
| Q |
417 |
cttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttctatgtttttggaattagcagtgtc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1493275 |
cttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggtcagtgttcaatgtttttggaattagcagtgtc |
1493374 |
T |
|
| Q |
517 |
gacgtgtatctgtg |
530 |
Q |
| |
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|||||||||||||| |
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| T |
1493375 |
gacgtgtatctgtg |
1493388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 1487313 - 1487442
Alignment:
| Q |
282 |
ttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatg |
381 |
Q |
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|||||||||||||||||||| |||||||| || ||||| ||| |||||||| ||| |||||||||| ||||| |||||||||||||| ||| || || |
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| T |
1487313 |
ttcctcaccttccttgttaatctgtttctcttacagcttgtaaataattgtc--gcatcaaaacttagtgttgactattacagaaacacatgttcatatt |
1487410 |
T |
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| Q |
382 |
ttgaatcaatagtaaaaaatgcagttgagatg |
413 |
Q |
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| T |
1487411 |
ttgaatcaatggtccaaaatacagttaagatg |
1487442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 484
Target Start/End: Original strand, 39800538 - 39800609
Alignment:
| Q |
413 |
gaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggt |
484 |
Q |
| |
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|||| |||| ||||| |||||||| | |||||||| ||| | |||||||| |||||||||||||||||||| |
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| T |
39800538 |
gaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggt |
39800609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 478
Target Start/End: Original strand, 53053585 - 53053645
Alignment:
| Q |
418 |
ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgt |
478 |
Q |
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|||| ||||||||||| || || ||||| || ||||| || |||||||||||||||||||| |
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| T |
53053585 |
ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgt |
53053645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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