View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20199_low_9 (Length: 220)
Name: NF20199_low_9
Description: NF20199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20199_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 51112636 - 51112452
Alignment:
| Q |
14 |
cagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgctactaatgctgctcagaaggct |
113 |
Q |
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| T |
51112636 |
cagagactttgccggtgaagctattcataaggctggagaatacacaggtagtgctgcacagaaggccaaagaatatgctactgatgctgctcagaaggct |
51112537 |
T |
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| Q |
114 |
gcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagagt |
198 |
Q |
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| T |
51112536 |
gcacagaaagccaaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaaaaccaaagagt |
51112452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 51112096 - 51112028
Alignment:
| Q |
128 |
agaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaaga |
196 |
Q |
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| T |
51112096 |
agaatatgccaatgctgcagcatacaagtctaaagactatgcaggtgatgctgcagagaagaccaaaga |
51112028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 51112360 - 51112301
Alignment:
| Q |
125 |
caaagaatatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcaca |
184 |
Q |
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| T |
51112360 |
caaagagtatgcaactgatgcagcatacaagtctaaagagtatgctggtgatgctgcaca |
51112301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 51111939 - 51111874
Alignment:
| Q |
132 |
tatgccactggtgcagcgcacaagtccaaagagtatgcaggtgatgctgcacaaaagaccaaagag |
197 |
Q |
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| T |
51111939 |
tatgccaatgatgcagcatacaaatctaaagactatgcaggtgatgctgctcaaaaaaccaaagag |
51111874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 51112460 - 51112419
Alignment:
| Q |
157 |
ccaaagagtatgcaggtgatgctgcacaaaagaccaaagagt |
198 |
Q |
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| T |
51112460 |
ccaaagagtatgcaggtgatgctacagagaagaccaaagagt |
51112419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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