View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2019_high_3 (Length: 388)
Name: NF2019_high_3
Description: NF2019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2019_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 2355478 - 2355145
Alignment:
| Q |
9 |
agcagagaattgaagaaaaactgaaggctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2355478 |
agcagagaattgaagaaaaactgaaagctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
2355379 |
T |
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| Q |
109 |
tgaaactagcaaattgatgtttaaattttgttatggttttgaagaggaagcagttggtgcaaggaatgaacttttaccttaaagttgttacatcaatccc |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2355378 |
tgaaactagcaaattgatgtttgaattttgttatggttttgaagaggaagcagttggtgcaaggaatgaacttttaccttaaagttgttacatcaatccc |
2355279 |
T |
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| Q |
209 |
aggcattgacaatcacgatgcaaatgcggtaaatctctctactgcaaggcaactcttcaatttagttttatttttacgtgcctcctttcattattgatta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
2355278 |
aggcattgacaatcacgatgcaaatgcggtaaatctctctactacaaggcaactcttcaatttagttttatttttacatgcctcctttcgttattgatta |
2355179 |
T |
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| Q |
309 |
agctctgaattctagagtatagacatgttaaact |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
2355178 |
agctctgaattctagagtatagacatgttaaact |
2355145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 2222561 - 2222689
Alignment:
| Q |
9 |
agcagagaattgaagaaaaactgaaggctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222561 |
agcagagaattgaagaaaaactgaaagctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
2222660 |
T |
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| Q |
109 |
tgaaactagcaaattgatgtttaaatttt |
137 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
2222661 |
tgaaactagcaaattgatgtttgaatttt |
2222689 |
T |
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