View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2019_low_2 (Length: 595)
Name: NF2019_low_2
Description: NF2019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2019_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Complemental strand, 39945328 - 39944756
Alignment:
| Q |
1 |
cctaacccaaaacacaattctagctatttgaatcaaacaaacaacaaaaagtaagaaagaccaaattccaaccaagataaaacctaaatcacgaattcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39945328 |
cctaacccaaaacacaattctagctatttgaatcaaacaaacaacaaaaagtaagaaagaccaaattccaaccaagataaaacctaaatcacgaattcta |
39945229 |
T |
|
| Q |
101 |
tagaaaatgtgattaggactaactaatcccaacgcccacatgtatgtaagcaacatacatgtgattgcaactatcatcaaaatcgccaatacccacacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
39945228 |
tagaaaatgtgattaggactaactaatcccaacgcccacatgtatgtaagcaacatacatgtgattgcaactatcatcaaaaccgccaaaacccacacta |
39945129 |
T |
|
| Q |
201 |
taaacttattatgaagaggaaatccgcttacgagaaccaaaagcacacatagtgatgcaaagaaagaagcagagttgaagaaaatgaatttaagataatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39945128 |
taaacttattatgaagaggaaatccgcttacgagaaccaaaagcacacatagtgatgcaaagaaagaagcagagttgaagaaaatgaatttaagataatc |
39945029 |
T |
|
| Q |
301 |
tggtgaccaaacatatcctacaaccgcagttcctgcttcacaaaaaccataatcaggacaagcgtaaccaccttttgttgtatcttcttgccaaacaccg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39945028 |
tggtgaccaaacatatcctacaaccgcagttcctgcttcacaaaaaccataatcaggacaagcgtaaccaccttttgttgtatcttcttgccaaacaccg |
39944929 |
T |
|
| Q |
401 |
cccggtggactaattactgactgaaaagtcatagttgcaatcacagttgctgctaccattaattgttctcttgtctttttatctatccaataaccttggt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944928 |
cccggtggactaattactgactgaaaagtcatagttgcaatcacagttgctgctaccattaattgttctcttgtctttttatctatccaataaccttggt |
39944829 |
T |
|
| Q |
501 |
ttatcaggtatttattgcagaaactctcaaccctgtcccatctattgtgttcatgttgttcattagctatgct |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39944828 |
ttatcaggtatttattgcagaaactctcaaccctgtcccatctattgtgttcatgttgttcattagctatgct |
39944756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 378 - 499
Target Start/End: Complemental strand, 39949296 - 39949175
Alignment:
| Q |
378 |
ttgtatcttcttgccaaacaccgcccggtggactaattactgactgaaaagtcatagttgcaatcacagttgctgctaccattaattgttctcttgtctt |
477 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| ||||| || ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
39949296 |
ttgtatcttcttgccaaacaccgcctggtggacttattactgattgaaatgtcattgttgcgattacagttgctgctaccatggattgttcttttgtctt |
39949197 |
T |
|
| Q |
478 |
tttatctatccaataaccttgg |
499 |
Q |
| |
|
|||||| ||||||| ||||||| |
|
|
| T |
39949196 |
tttatcaatccaattaccttgg |
39949175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 39954178 - 39954117
Alignment:
| Q |
218 |
ggaaatccgcttacgagaaccaaaagcacacatagtgatgcaaagaaagaagcagagttgaa |
279 |
Q |
| |
|
|||||||| || | ||||||||| | ||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
39954178 |
ggaaatccactgatgagaaccaacaccacacatagagaagcaaagaaagatgcagagttgaa |
39954117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 39954304 - 39954219
Alignment:
| Q |
92 |
cgaattctatagaaaatgtgattaggactaactaatcccaacgcccacatgtatgtaagcaacatacatgtgattgcaactatcat |
177 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||| | |||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
39954304 |
cgaattctatagcaaacatgattaggactaatcaatccaagtgcccacatgtatgtgagcaacatgaatgtgacagcaattatcat |
39954219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 29671522 - 29671593
Alignment:
| Q |
379 |
tgtatcttcttgccaaacaccgcccggtggactaattactgactgaaaagtcatagttgcaatcacagttgc |
450 |
Q |
| |
|
||||| ||||||||||||||| || |||||||| ||| | || ||||||||||| || ||||| |||||||| |
|
|
| T |
29671522 |
tgtattttcttgccaaacaccacctggtggacttattgcggattgaaaagtcattgtggcaattacagttgc |
29671593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University