View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2019_low_5 (Length: 236)
Name: NF2019_low_5
Description: NF2019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2019_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 14259929 - 14259725
Alignment:
| Q |
19 |
aacaaccagttatggaagcatttagccctt-gccatgttcaatcaagtaatgtaacataacataaatcttgaaccctcttgccaccggaatatcgtgtaa |
117 |
Q |
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| T |
14259929 |
aacaaccagttatggaagcatttagccctttgccatgttcaatcaagtaatgtaacataacataaatcttgaaccctcttaccaccggaatatagtgtaa |
14259830 |
T |
|
| Q |
118 |
ataagttcactttgcgtaaagatactagatgatataaatagtacttcctccttttgggattttaagtgcttttgttaaatac--atgcattctacattgt |
215 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
14259829 |
ataagttcactttgcataaaaatactagatgatataaatagtacttcctcctttccggattttaagtgcttttgttaaatacatatgcattctacactgt |
14259730 |
T |
|
| Q |
216 |
tataa |
220 |
Q |
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||||| |
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| T |
14259729 |
tataa |
14259725 |
T |
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