View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20200_low_1 (Length: 637)
Name: NF20200_low_1
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20200_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 509
Target Start/End: Complemental strand, 34133649 - 34133152
Alignment:
| Q |
12 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34133649 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
34133550 |
T |
|
| Q |
112 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
34133549 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagc |
34133450 |
T |
|
| Q |
212 |
ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34133449 |
ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggttattatgatacagagcataccaaaaat |
34133350 |
T |
|
| Q |
312 |
gttagagactggaaagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggacta |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34133349 |
gttagagactggaaagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctgatgaacatgatgatggtgttattcaatggacta |
34133250 |
T |
|
| Q |
412 |
atcaatcacctcaatatcctccacaattcaggtagttgattcatactaatatattattcattgattgttgaaagtctcatgttgggttgtgttgatag |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34133249 |
atcaatcacctcaatatcctccacaattcaggtagttgattcatactaatatattattcattgatcgttgaaagtctcatgttgggttgtgttgatag |
34133152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 12 - 448
Target Start/End: Complemental strand, 34137560 - 34137124
Alignment:
| Q |
12 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
111 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||| | ||| ||| |||||||||||||||||||||||||| |
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|
| T |
34137560 |
cacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaa |
34137461 |
T |
|
| Q |
112 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagc |
211 |
Q |
| |
|
|||| |||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| ||||| |
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|
| T |
34137460 |
acttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagc |
34137361 |
T |
|
| Q |
212 |
ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaat |
311 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |
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|
| T |
34137360 |
tgctaaattgttctttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaat |
34137261 |
T |
|
| Q |
312 |
gttagagactggaaagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggacta |
411 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| | | ||||| ||||| ||||||| | |||||||||| | |||||| ||||||||||| ||| |
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|
| T |
34137260 |
gttagggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaatttattcaatggtcta |
34137161 |
T |
|
| Q |
412 |
atcaatcacctcaatatcctccacaattcaggtagtt |
448 |
Q |
| |
|
||| ||| || |||| ||| |||| ||||||||||| |
|
|
| T |
34137160 |
atccatccccacaattcccttcacacttcaggtagtt |
34137124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 34141223 - 34140894
Alignment:
| Q |
12 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
111 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| | ||| ||| ||||||||||||||||| |||||||| |
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|
| T |
34141223 |
cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa |
34141124 |
T |
|
| Q |
112 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagc |
211 |
Q |
| |
|
||| || |||||||||||||||||| |||| | |||||| |||||| ||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
34141123 |
gcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagc |
34141024 |
T |
|
| Q |
212 |
ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaat |
311 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || || | ||||| ||| |
|
|
| T |
34141023 |
tgctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggttattatgacactgaactcaccaagaat |
34140924 |
T |
|
| Q |
312 |
gttagagactggaaagaagtgtttgatttt |
341 |
Q |
| |
|
||||||||| ||||||||||||||||||| |
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|
| T |
34140923 |
gttagagacatgaaagaagtgtttgatttt |
34140894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 34127376 - 34126942
Alignment:
| Q |
12 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgatctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
111 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||||| | ||| ||||| |||||| | |
|
|
| T |
34127376 |
cacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
34127277 |
T |
|
| Q |
112 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccacggagtccctttgagtctaaggcagagacttgaggaagc |
211 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| ||||||||||| |||||||| | |||||||||||| | ||||| |||||||| ||||| |
|
|
| T |
34127276 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagc |
34127177 |
T |
|
| Q |
212 |
ttctagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcaatcctactggttattatgatacagagcataccaaaaat |
311 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||| || | |||||||| ||||| |||||| ||||| ||| |
|
|
| T |
34127176 |
tgctagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatcacaccaattggttattttgataaagagcacaccaagaat |
34127077 |
T |
|
| Q |
312 |
gttagagactggaaagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctgatgaacatgatgatggtgttattcaatggacta |
411 |
Q |
| |
|
|| ||| |||||| |||||||||||||||| | | |||||| ||||| ||||||| | || ||||||| |||||||| |||||||||||| ||| |
|
|
| T |
34127076 |
gtaagaaactggatagaagtgtttgattttttcgccagagatcccactttggttcctctgaattgtgatgaaaatgatgatcaagttattcaatggtcta |
34126977 |
T |
|
| Q |
412 |
atcaatcacctcaatatcctccacaattcaggtag |
446 |
Q |
| |
|
||| || ||| | ||||||||| ||||||||||| |
|
|
| T |
34126976 |
atccgtcccctaagtatcctccaaaattcaggtag |
34126942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 502 - 619
Target Start/End: Complemental strand, 34132035 - 34131918
Alignment:
| Q |
502 |
gttgatagtaaataattatgtccagtagttaggacttgggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34132035 |
gttgatagtaaataattatgtccagtagttaggacttaggaatttgttgcaattgatctctataaatatgacagttatgtatgaattagatagaagttaa |
34131936 |
T |
|
| Q |
602 |
cagattggacgttataga |
619 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
34131935 |
cagattggacgtgataga |
34131918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 34143438 - 34143277
Alignment:
| Q |
280 |
ctggttattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgattttctttctcaagatcctactttagttcctcgtagttctga |
379 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| | || |||||||| ||||||| | |||||| |
|
|
| T |
34143438 |
ctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaagtgtttgattttctctctaatgaccctactttggttcctctgaattctga |
34143339 |
T |
|
| Q |
380 |
tgaacatgatgatggtgttattcaatggactaatcaatcacctcaatatcctccacaattca |
441 |
Q |
| |
|
|||||| |||||| || | | | |||||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
34143338 |
tgaacacgatgatcaagtcacttactggactaatccatcccctcaataccctccacacttca |
34143277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 12324064 - 12324008
Alignment:
| Q |
285 |
tattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgatttt |
341 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12324064 |
tattatgaaactgagcatactaagaatgttagagattggaaggaagtgtttgatttt |
12324008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 12375217 - 12375161
Alignment:
| Q |
285 |
tattatgatacagagcataccaaaaatgttagagactggaaagaagtgtttgatttt |
341 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12375217 |
tattatgaaactgagcatactaagaatgttagagattggaaggaagtgtttgatttt |
12375161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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