View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20200_low_13 (Length: 218)

Name: NF20200_low_13
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20200_low_13
NF20200_low_13
[»] chr8 (2 HSPs)
chr8 (16-81)||(24505588-24505653)
chr8 (158-203)||(24505465-24505510)
[»] chr7 (2 HSPs)
chr7 (169-203)||(4532482-4532516)
chr7 (169-203)||(13486523-13486557)
[»] chr6 (2 HSPs)
chr6 (169-203)||(10642084-10642118)
chr6 (158-203)||(14964924-14964970)
[»] chr5 (1 HSPs)
chr5 (169-203)||(24832747-24832781)
[»] chr4 (1 HSPs)
chr4 (158-199)||(20874369-20874411)
[»] chr3 (1 HSPs)
chr3 (169-203)||(14482334-14482368)
[»] chr2 (1 HSPs)
chr2 (169-201)||(21246298-21246330)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 24505653 - 24505588
Alignment:
Q  16 atgaaagtttggaagaaactatgggttcttcatactatatctaggcataaactattgagagtgaag 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24505653 atgaaagtttggaagaaactatgggttcttcatactatatctaggcataaactgttgagagtgaag 24505588  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 24505510 - 24505465
Alignment:
Q  158 ctcaccctttatttgttgtgttgttttctgtatggtggttgtacct 203  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  24505510 ctcaccccttatttgttgtgttgttttctggatggtggttgtacct 24505465  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 4532482 - 4532516
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtacct 203  Q
    |||||||||||||||||||||||||||||||||||    
T  4532482 tttgttgtgttgttttctgtatggtggttgtacct 4532516  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 13486523 - 13486557
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtacct 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  13486523 tttgttgtgttgttttatgtatggtggttgtacct 13486557  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 10642084 - 10642118
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtacct 203  Q
    ||||||||||| |||||||||||||||||||||||    
T  10642084 tttgttgtgttattttctgtatggtggttgtacct 10642118  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 14964970 - 14964924
Alignment:
Q  158 ctcaccctttatt-tgttgtgttgttttctgtatggtggttgtacct 203  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  14964970 ctcaccccttattatgttgtgttgttttctgtatggtgcttgtacct 14964924  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 24832747 - 24832781
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtacct 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  24832747 tttgttgtgttgttttatgtatggtggttgtacct 24832781  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 20874369 - 20874411
Alignment:
Q  158 ctcaccctttat-ttgttgtgttgttttctgtatggtggttgt 199  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  20874369 ctcacgctttatattgttgtgttgttttctgtatggtggttgt 20874411  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 14482334 - 14482368
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtacct 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  14482334 tttgttgtgttgttttatgtatggtggttgtacct 14482368  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 21246330 - 21246298
Alignment:
Q  169 tttgttgtgttgttttctgtatggtggttgtac 201  Q
    |||||||||||||||| ||||||||||||||||    
T  21246330 tttgttgtgttgttttatgtatggtggttgtac 21246298  T

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