View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20200_low_14 (Length: 203)
Name: NF20200_low_14
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20200_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 3878568 - 3878734
Alignment:
| Q |
18 |
gttttaacattaggaagaggacaaataggggatgcnnnnnnngttggtttacctgatttttccatgttgagagaattgtatatcgatgattctacacttg |
117 |
Q |
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| T |
3878568 |
gttttaacattaggaagaggacaaataggggatgctttttttgttgttctacctgattgttccatgttgagagaattgtatatcgatgattctacacttg |
3878667 |
T |
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| Q |
118 |
gaaatagtattcaggagatatctgttgttcatgagagattgtgtcatcttgaattaataaaatgtcg |
184 |
Q |
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| T |
3878668 |
gaaatagtattccggagatatctgttgttcatgagagattgtgtcatcttgaattaataaaatgtcg |
3878734 |
T |
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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 3864561 - 3864727
Alignment:
| Q |
18 |
gttttaacattaggaagaggacaaataggggatgcnnnnnnngttggtttacctgatttttccatgttgagagaattgtatatcgatgattctacacttg |
117 |
Q |
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||||||||||| ||||||||||| ||||||||||| ||| | ||||||||| | | ||||||||||||||| ||||| ||||||| ||||||| |
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| T |
3864561 |
gttttaacattgggaagaggacagataggggatgcattttttcttgctctacctgattgtactatgttgagagaattgcatatcaatgattcgacacttg |
3864660 |
T |
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| Q |
118 |
gaaatagtattcaggagatatctgttgttcatgagagattgtgtcatcttgaattaataaaatgtcg |
184 |
Q |
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||||||||||||| ||||||||| | || ||||||||| |||||||||||||||||| ||||||||| |
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| T |
3864661 |
gaaatagtattcaagagatatctatcgtccatgagagactgtgtcatcttgaattaacaaaatgtcg |
3864727 |
T |
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