View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20200_low_3 (Length: 555)
Name: NF20200_low_3
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20200_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 13149779 - 13150163
Alignment:
| Q |
1 |
ccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgaggaaaagattttcatcaaatgagtcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
13149779 |
ccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgatgagaagattttcatcaaatgagtcaa |
13149878 |
T |
|
| Q |
101 |
aggtccaaccattagggaatagtaactcattcaaaccattggataaagtattccatgtgtcttttcttggagctagtagctcctcaagaaaaccaagttg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13149879 |
aggtccaaccattagggagtagtaactcattcaaaccagtggataaagtattccatgtgtcttttcttggagctagtagctcctcaagaaaaccaagttg |
13149978 |
T |
|
| Q |
201 |
agaaagttccatttttctttctcttttcccacttttgtgaactatgagtaaactaaagaaaaaccaaacagaaaagtctataacaatgggatgaagttga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
13149979 |
agaaagttccatttttctttctcttttcccacttttgtgaactatgaataaactaaagaaaaaccaaacagaaaagtct-taacaatggaatgaagttga |
13150077 |
T |
|
| Q |
301 |
acaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaactatatgtact--atatatattgtgtaccaatgctc |
384 |
Q |
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| T |
13150078 |
acaaaatgggaggagtttcaagtttggttaaataatgctatgataagttactatatgtactaaatatatattgtgtaccaatgctc |
13150163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 29009117 - 29008871
Alignment:
| Q |
1 |
ccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgaggaaaagattttcatcaaatgagtcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
29009117 |
ccataaggacattcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgatgagaagattttcatcaaatgagtcaa |
29009018 |
T |
|
| Q |
101 |
aggtccaaccattagggaatagtaactcattcaaaccattggataaagtattccatgtgtcttttcttggagctagtagctcctcaagaaaaccaagttg |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009017 |
aggtccaaccattagggagtagtaactcattcaaaccattggataaagtattccatgtgtcttttcttggagctagtagctcctcaagaaaacca----- |
29008923 |
T |
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| Q |
201 |
agaaagttccatttttctttctcttttcccacttttgtgaactatgagtaaactaa |
256 |
Q |
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| T |
29008922 |
----agttccatttttctctctcttttcccacttttgtgaactatgaataaactaa |
29008871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 29007957 - 29007824
Alignment:
| Q |
253 |
ctaaagaaaaaccaaacagaaaagtctataacaatgggatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaact |
352 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29007957 |
ctaaagaaaaaccaaacagaaaagtctttaacaatgggatgaagttgaacaaaatgggaggagtttcaagtttggttaaataatgctatgataagtaatt |
29007858 |
T |
|
| Q |
353 |
atatgtact--atatatattgtgtaccaatgctc |
384 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
29007857 |
atatgtactaaatatatattgtgtaccaatgctc |
29007824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 407 - 529
Target Start/End: Complemental strand, 29007789 - 29007667
Alignment:
| Q |
407 |
gtattggactccctcgcggttaaggattttctgcattcacgtagtagacacattcaaagtcattctatcaagtcggacaattcaatttcatactcgatat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007789 |
gtattggactccctcgcggttaaggattttctgcattcatgtggtagacacattcaaagtcattctatcaagtcggacaattcaatttcatactcgatat |
29007690 |
T |
|
| Q |
507 |
tataaagtctaaaataaaaatta |
529 |
Q |
| |
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|||||| |||||||||||||||| |
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| T |
29007689 |
tataaactctaaaataaaaatta |
29007667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 23851853 - 23851956
Alignment:
| Q |
12 |
ttcaaatctatggtctaatggtgttgagaatgaagcaaatgaagggtttaaagatggattgaggaaaagattttcatcaaatgagtcaaaggtccaacca |
111 |
Q |
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||||||||||||||||| |||||||||||||| | ||||||| || || |||||||| ||| | ||||| ||||||||||||||||||||||||||| |
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| T |
23851853 |
ttcaaatctatggtctattggtgttgagaatgtaacaaatgatggattgaaagatgggttgtg---tagattgtcatcaaatgagtcaaaggtccaacca |
23851949 |
T |
|
| Q |
112 |
ttaggga |
118 |
Q |
| |
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|||||| |
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| T |
23851950 |
gtaggga |
23851956 |
T |
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