View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20200_low_6 (Length: 362)

Name: NF20200_low_6
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20200_low_6
NF20200_low_6
[»] chr2 (4 HSPs)
chr2 (1-262)||(34754077-34754338)
chr2 (71-144)||(17875516-17875589)
chr2 (297-346)||(34754563-34754612)
chr2 (259-299)||(34754354-34754394)
[»] scaffold0082 (1 HSPs)
scaffold0082 (145-231)||(15416-15502)
[»] scaffold0212 (1 HSPs)
scaffold0212 (1-72)||(19675-19746)
[»] chr7 (2 HSPs)
chr7 (1-61)||(40607464-40607524)
chr7 (232-262)||(41095570-41095600)
[»] scaffold0041 (1 HSPs)
scaffold0041 (232-262)||(107696-107726)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 34754077 - 34754338
Alignment:
Q  1 tttaggtgtaagaatttaagagtggatttatcccctctcttcgaaaccagactaattcccatacaatacatgaaccgagatagtatcgctaattctacgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34754077 tttaggtgtaagaatttaagagtggatttatcccctctcttcgaaaccaggctaattcccatacaatacatgaaccgagatagtatcgctaattctacgt 34754176  T
Q  101 agggttggattttcccctaacgtattgatccagaaacgcgagtagaacccaattcttccacgacccccatttccttctcttatgagattttatttttaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34754177 agggttggattttcccctaacgtattgatccagaaacgcgagtagaacccaattcttccacgacccccatttccttctcttatgagattttatttttaag 34754276  T
Q  201 atcacatcacctttcataccaaaaagaaagcagtactccatctccatcattgcatatgggaa 262  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34754277 atcacatcacctttcataccaaaaagaaatcagtactccatctccatcattgcatatgggaa 34754338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 17875589 - 17875516
Alignment:
Q  71 tgaaccgagatagtatcgctaattctacgtagggttggattttcccctaacgtattgatccagaaacgcgagta 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17875589 tgaaccgagatagtatcgctaattctacgtagggttggattttccccaaacgtattgatccagaaacgcgagta 17875516  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 34754563 - 34754612
Alignment:
Q  297 ttaatcgggaggggtgtgaatatggttaacttgcaactttgcgtgggaag 346  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34754563 ttaatcgggaggggtgtgaatatggttaacttgcaactttgtgtgggaag 34754612  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 34754354 - 34754394
Alignment:
Q  259 ggaaaaggcatgacatcatatctcagttaaatacaatgtta 299  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  34754354 ggaaaaggcatgacatcatctctcagttaaatacaatgtta 34754394  T

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Target: scaffold0082 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 15416 - 15502
Alignment:
Q  145 gaacccaattcttccacgacccccatttccttctcttatgagattttatttttaagatcacatcacctttcataccaaaaagaaagc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15416 gaacccaattcttccacgacccccatttccttctcttatgagattttatttttaagatcacatcacctttcataccaaaaagaaagc 15502  T

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Target: scaffold0212 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19675 - 19746
Alignment:
Q  1 tttaggtgtaagaatttaagagtggatttatcccctctcttcgaaaccagactaattcccatacaatacatg 72  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19675 tttaggtgtaagaatttaacagtggatttatcccctctcttcgaaaccaggctaattcccatacaatacatg 19746  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40607524 - 40607464
Alignment:
Q  1 tttaggtgtaagaatttaagagtggatttatcccctctcttcgaaaccagactaattccca 61  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  40607524 tttaggtgtaagaatttaacagtggatttatcccctctcttcgaaaccaggctaattccca 40607464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 262
Target Start/End: Original strand, 41095570 - 41095600
Alignment:
Q  232 agtactccatctccatcattgcatatgggaa 262  Q
    |||||||||||||||||||||||||||||||    
T  41095570 agtactccatctccatcattgcatatgggaa 41095600  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 262
Target Start/End: Complemental strand, 107726 - 107696
Alignment:
Q  232 agtactccatctccatcattgcatatgggaa 262  Q
    |||||||||||||||||||||||||||||||    
T  107726 agtactccatctccatcattgcatatgggaa 107696  T

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