View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20200_low_8 (Length: 273)
Name: NF20200_low_8
Description: NF20200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20200_low_8 |
 | |
|
| [»] chr2 (4 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 40627678 - 40627931
Alignment:
| Q |
20 |
aactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatattgttatgacaaggtggctgacctgcgtgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627678 |
aactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatattgttatgacaaggtggctgacctgcgtgt |
40627777 |
T |
|
| Q |
120 |
tccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcctcgccgtgattctaatcatttttccacatcttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627778 |
tccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcctcgccgtgattctaatcatttttccacatcttg |
40627877 |
T |
|
| Q |
220 |
aacctccgttgtaccacccagtggacaaagccaccactctttccgagttgtcgt |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40627878 |
aacctccgttgtaccacccagtggacaaagccaccactctttccgagttgtcgt |
40627931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 40610472 - 40610705
Alignment:
| Q |
20 |
aactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatattgttatgacaaggtggctgacctgcgtgt |
119 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||| || |
|
|
| T |
40610472 |
aactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgacaaggtggctgccatgcatgc |
40610571 |
T |
|
| Q |
120 |
tccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcctcgccgtgattctaatcatttttccacatcttg |
219 |
Q |
| |
|
|||| |||||| |||||||| |||||||| | |||||||| |||||||||||||||||||| |||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
40610572 |
tcctcatcacaaccattcactgaatcacattcatccaccaccttcgccgtcacactcctcccattcctcgctgtgattctaaccatttgcccacatcttg |
40610671 |
T |
|
| Q |
220 |
aacctccgttgtaccacccagtggacaaagccac |
253 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||||| |
|
|
| T |
40610672 |
aacctcctttataccacccagtagacaacgccac |
40610705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 40616967 - 40617216
Alignment:
| Q |
20 |
aactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccacaatattgttatgacaaggtggctgacctgcgtgt |
119 |
Q |
| |
|
|||||||||||||||||||| | |||||| || |||| ||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
40616967 |
aactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgacaaggtggctgacctgcatgt |
40617066 |
T |
|
| Q |
120 |
tccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcctcgccgtgattctaatcatttttccacatcttg |
219 |
Q |
| |
|
|| | ||||||||||||||| |||||||| ||||| ||||||||||| |||||| ||||||||||| |||| | |||||||| | ||||||||| |||| |
|
|
| T |
40617067 |
tcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccctaattctaataaattttccacaccttg |
40617166 |
T |
|
| Q |
220 |
aacctccgttgtaccacccagtggacaaagccaccactctttccgagttg |
269 |
Q |
| |
|
||||||| ||||||| ||||| || || ||||| | ||||||||||||| |
|
|
| T |
40617167 |
aacctccactgtaccatccagtcgataatgccacgattctttccgagttg |
40617216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 40641337 - 40641278
Alignment:
| Q |
208 |
ttccacatcttgaacctccgttgtaccacccagtggacaaagccaccactctttccgagt |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||| |
|
|
| T |
40641337 |
ttccacaccttgaacctccgttgtaccacccagtggacagcgccactactctttctgagt |
40641278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University