View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20201_low_1 (Length: 317)
Name: NF20201_low_1
Description: NF20201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20201_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 66 - 303
Target Start/End: Original strand, 9010868 - 9011105
Alignment:
| Q |
66 |
tataatctagcacgagtacatatactatagacaagttaggcatccagtagtttatatatataggtcaagagtaacactcttatgttggtataaccacatc |
165 |
Q |
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| T |
9010868 |
tataatctagcacgagtacatatactatagacaagttaggcatccagtagtttatatatataggtcaagagtaacactcttatgttggtataaccacatc |
9010967 |
T |
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| Q |
166 |
atgtttggaccctagaaactgtcgcagaaaccttacatctaaccaccctttcaaaccaagctatatgactaaacactacctataattgtgacaataagac |
265 |
Q |
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| T |
9010968 |
atgtttggaccctagaaactgtcgcagaaaccttacatctaaccaccctttcaaaccaagctatatgactaaacactacctataattgtgacaataagac |
9011067 |
T |
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| Q |
266 |
ccattagttaacactcaatttcttaataaggatctaat |
303 |
Q |
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| T |
9011068 |
ccattagttaacactcaatttcttaataaggatctaat |
9011105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 9010806 - 9010838
Alignment:
| Q |
4 |
atgacaagaatatattaacataattaggaaagt |
36 |
Q |
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| T |
9010806 |
atgacaagaatatattaacataattaggaaagt |
9010838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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