View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20201_low_4 (Length: 244)
Name: NF20201_low_4
Description: NF20201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20201_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 12365769 - 12365996
Alignment:
| Q |
17 |
atcttgatgaagagaccgtaaagtaactaataggggacagctggcagtatgagtcacgccagtctaggagctacttcttagagaactgctactactcttc |
116 |
Q |
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| T |
12365769 |
atcttgatgaagagaccataaagcaactaatagcggacagctggcagtatgagtcatgccagtctaggagctacttctcagaggactgctactactcttc |
12365868 |
T |
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| Q |
117 |
gtctgatccaaacccgtcctcaagtcacgagcctatcttcaaagactaatatgtcatataagagtccaataagtcatttccaagatggcataggtgtcaa |
216 |
Q |
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| T |
12365869 |
gtctgatccaaacatgtccccaagtcacgagtctatcttcaaagactaatatgtcatataagagtccaataagtcatttccaagatggcatgtgtgtcaa |
12365968 |
T |
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| Q |
217 |
aaacgtgtcttgcataatagcaatgtgc |
244 |
Q |
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| T |
12365969 |
taacgtgtcttgcataatagcaatgtgc |
12365996 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 19965782 - 19965745
Alignment:
| Q |
203 |
ggcataggtgtcaaaaacgtgtcttgcataatagcaat |
240 |
Q |
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| T |
19965782 |
ggcataggtgtcaaaaacgtgtcttgcataatagcaat |
19965745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 6455599 - 6455637
Alignment:
| Q |
205 |
cataggtgtcaaaaacgtgtcttgcataatagcaatgtg |
243 |
Q |
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| T |
6455599 |
cataggtgtcaaaaacgtgtctttcataataacaatgtg |
6455637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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