View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_16 (Length: 254)
Name: NF20202_high_16
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 43240348 - 43240112
Alignment:
| Q |
19 |
gacaagaaatgctatgtatgctagggtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtat |
118 |
Q |
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| T |
43240348 |
gacaagaaatgctatgtatgctagagtgacaacagctgaagctcctagccaatttctcatagaagataatgttggaatggagaaggaaaaaatgaagtat |
43240249 |
T |
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| Q |
119 |
gcagctcctgttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccac-tttatataaaa |
217 |
Q |
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| T |
43240248 |
gctgctcctgttactactatgtagtattgaagtctccaaggagaatcactaaattctgcgttgatttcctatcacaaaaaacaaccacttttatataaaa |
43240149 |
T |
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| Q |
218 |
aattactcatttaattaattgatccaatcatttatat |
254 |
Q |
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| T |
43240148 |
aattactcatttaattaattgatccaatcatttatat |
43240112 |
T |
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