View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_17 (Length: 245)
Name: NF20202_high_17
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43239981 - 43239751
Alignment:
| Q |
1 |
ataatttcattaagaatctctttcagagtttcaattaagaggaacatatgattgaagtttgaaattaagnnnnnnncaagttaattagtttaaagacaaa |
100 |
Q |
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| T |
43239981 |
ataatttcattaagaatctctttcagagtttcaattaagaggaacatatgattgaagtttgaagttaagaaaaaaacaagttaattagtttaaagacaaa |
43239882 |
T |
|
| Q |
101 |
tgcgtgtttttaggaaacaatttcatcttaatctcgccacgaaatcttaattttgtatgtctatgcacatcaaacacgtgattttggtttatatagatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43239881 |
ggcgtgtttttaggaaacaatttcatcttaatctcgccacgaaatcttaattttgtatgtctatgcacatcaaacacatgattttggtttatatagatca |
43239782 |
T |
|
| Q |
201 |
ctannnnnnnatgtagtcacatgattttggt |
231 |
Q |
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||| ||||||||||||||||||||| |
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| T |
43239781 |
ctatttttttatgtagtcacatgattttggt |
43239751 |
T |
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