View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_19 (Length: 235)
Name: NF20202_high_19
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 18890480 - 18890694
Alignment:
| Q |
18 |
aaaaaagggttaatcgagattaataaacattgatttctcattatgtggcacagcaacactacaatataatttgagtttcatcgcgatttagagattaaac |
117 |
Q |
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| T |
18890480 |
aaaaatgggttaatcgagatttataaacattgatttctcattatgtggcacagcaacactgcaatataatttgagtttcatcgcgattcagagtttaaac |
18890579 |
T |
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| Q |
118 |
aaaaccacaagccaatttcaacaatcaatggtttattcatggattcgaattttcggtac---acgatagtgaaatcgt--------atgaaacaagtttt |
206 |
Q |
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| T |
18890580 |
aaaaccacaagccaatttcaacaatcaatggtttattcatggatttgaattttcggtacacgacgatagtgaaatcgtacgtattcatgaaacaagtttc |
18890679 |
T |
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| Q |
207 |
tccatataaactttt |
221 |
Q |
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| T |
18890680 |
tccatataaactttt |
18890694 |
T |
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