View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_3 (Length: 512)
Name: NF20202_high_3
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 25540433 - 25540917
Alignment:
| Q |
13 |
aaggactaactagtatttgatatcacattaatattcttttatttttcaatacaaaatattgtgtgattaacacgcttacatgcaaatgttaccaaattct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540433 |
aaggactaactagtatttgatatcacattaatattcttttatttttcaatacaaaatattgtgtgattaacacgcttacatgcaaatgttaccaaattct |
25540532 |
T |
|
| Q |
113 |
ttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatcttgctggtagatccaactttgtcaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540533 |
ttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatcttgctggtagatccaactttgtcaaa |
25540632 |
T |
|
| Q |
213 |
atacagttggatatatatttaatggtatacatatagactataattttgttaaaccatttgtcttgtgatataagttgattcaatggtggagatgaaaatt |
312 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540633 |
atacagttggatatatatttgatggtatatatatagactataactttgttaaaccatttgtcttgtgatataagttgattcaatggtggagatgaaaatt |
25540732 |
T |
|
| Q |
313 |
gtgtaatgcaataaatgcaccaaatcctctccatgattaaggggtttgtttgcttgagtgcatattgttgtggcaggaccaacctaacaaattgttaagc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25540733 |
gtgtaatgcaataaatgcaccaaatcctctccatgattaaggggtttgtttgcttgagtgcatattgttgtggcaggaccaacctaacaagttgttaagc |
25540832 |
T |
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| Q |
413 |
gtaatgcgaagatgaaaataagaataacactttttctattgatataaatagcaatatcttattaatggagtaatgttgtattgtt |
497 |
Q |
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| T |
25540833 |
gtaatgcgaagacgaaaataagaataacactttttctattgatataaatagcaatatcttattaatggagtaatgttgtattgtt |
25540917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 14266696 - 14266807
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatc |
186 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || | |||||||||||||||||| ||||||| ||||| |
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| T |
14266696 |
cttacttgcaaatgttaccaaattctttttgatgtaggctttggagcaaattaaaatctaatttcgagaaagtgagtagaatttcattatgggatggatc |
14266795 |
T |
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| Q |
187 |
ttgctggtagat |
198 |
Q |
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||||| |||||| |
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| T |
14266796 |
ttgctcgtagat |
14266807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 2326900 - 2326839
Alignment:
| Q |
127 |
ttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatctt |
188 |
Q |
| |
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|||||| ||||| ||||| || |||||||||||||||||| ||||| | || |||||||||| |
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| T |
2326900 |
ttggagaatattgaaatccaattttgccaaagtgagtagagtttcattgtgtgaaggatctt |
2326839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 17180854 - 17180749
Alignment:
| Q |
86 |
gcttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggat |
185 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||||| |
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| T |
17180854 |
gcttacttgcaaatattaccgaattctttttgatgtagcttttggagcatattaaaatctaattttgccaaagagagtagtatttcattatgggaaggat |
17180755 |
T |
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| Q |
186 |
cttgct |
191 |
Q |
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|||||| |
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| T |
17180754 |
cttgct |
17180749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 25832883 - 25832779
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatc |
186 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||| || ||||||||||||||||||||| ||| ||||||| |
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| T |
25832883 |
cttacttgcaaatgtttccaaactctttttgatgtaggctttggagcaaattaaaatctaatttcgccaaagtgagtagaatttcatcatgcgaaggatt |
25832784 |
T |
|
| Q |
187 |
ttgct |
191 |
Q |
| |
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||||| |
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| T |
25832783 |
ttgct |
25832779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 41351654 - 41351758
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatc |
186 |
Q |
| |
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||||| |||||| ||| |||||||| || |||| | | |||| |||||||| |||||||| ||||||||| ||||| ||||||| ||||||||||||| |
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| T |
41351654 |
cttacttgcaaaagtttccaaattccttccgatgcaagctttgaagcatattgaaatctaattttgccaaaaggagtaaaatttcattatgggaaggatc |
41351753 |
T |
|
| Q |
187 |
ttgct |
191 |
Q |
| |
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||||| |
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| T |
41351754 |
ttgct |
41351758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 41318295 - 41318399
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatc |
186 |
Q |
| |
|
||||| || ||| ||||| |||||| |||||||||| ||||||||||||| ||||||| ||||||||| |||||| | ||| |||| |||||||| |
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| T |
41318295 |
cttacttgtaaaagttactaaattccttttgatgtaaactttggagcatattgaaatctagttttgccaaaatgagtaaatttttgttatgtgaaggatc |
41318394 |
T |
|
| Q |
187 |
ttgct |
191 |
Q |
| |
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||||| |
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| T |
41318395 |
ttgct |
41318399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 17827934 - 17828038
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggagcatattaaaatctaactttgccaaagtgagtagaatttcactatgggaaggatc |
186 |
Q |
| |
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||||| || ||| |||||||||||||| ||||||||| ||||||||||||| ||||||| | ||| ||| |||||| | ||||| |||| |||||||| |
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|
| T |
17827934 |
cttacttggaaaagttaccaaattcttcttgatgtagactttggagcatattgaaatctagttgtgctaaaatgagtaaattttcattatgcgaaggatc |
17828033 |
T |
|
| Q |
187 |
ttgct |
191 |
Q |
| |
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||||| |
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|
| T |
17828034 |
ttgct |
17828038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 25792789 - 25792744
Alignment:
| Q |
87 |
cttacatgcaaatgttaccaaattctttttgatgtaggatttggag |
132 |
Q |
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||||| |||||| |||||||||||| |||||||||||| ||||||| |
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| T |
25792789 |
cttacttgcaaaggttaccaaattccttttgatgtagggtttggag |
25792744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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