View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_7 (Length: 401)
Name: NF20202_high_7
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 7285349 - 7284993
Alignment:
| Q |
1 |
agaattttgaaatcatgtttgcctaatgtgggagtttttaagttttccatgatactatatataatggtgcagagagtagagttttttctttgggaattat |
100 |
Q |
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| T |
7285349 |
agaattttgaaatcatgtttgcctgatgtgggagtttttaagttttccatgatactatatataatggtgcagagagtagagttttttctttgggaattat |
7285250 |
T |
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| Q |
101 |
aatatttatatttaatggggtatagagtttaatgttataaactgatatcattgtgtttggtgttaagttatgtggtctcaatggccacatgaagcacatc |
200 |
Q |
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| T |
7285249 |
aatatttatatttaatggggtatagagtttaatgttataaactgatatcattgtgtttggtgttaagttatgtggtctcaatggccacatgaagcacatc |
7285150 |
T |
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| Q |
201 |
aatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattctagcttttaatgggttataactcgcaagttaaattg |
300 |
Q |
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| T |
7285149 |
aatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattctagcttttaatgggttataactcgcaagttaaattg |
7285050 |
T |
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| Q |
301 |
tgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaaccctt |
357 |
Q |
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| T |
7285049 |
tgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaagcctt |
7284993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 386
Target Start/End: Complemental strand, 7284944 - 7284912
Alignment:
| Q |
354 |
ccttaattattctttatttagcacttcaaattt |
386 |
Q |
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| T |
7284944 |
ccttaattattctttatttagcacttcaaattt |
7284912 |
T |
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