View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_high_8 (Length: 352)
Name: NF20202_high_8
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_high_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 6932473 - 6932205
Alignment:
| Q |
13 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagnnnnnnntcggt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6932473 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagaaaaaaatcggt |
6932374 |
T |
|
| Q |
113 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctaatttggtcttgtagttcaaataattccgtaccatgaagtatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6932373 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctgatttggtcttgtagtccaaataattccgtaccatgaagtatct |
6932274 |
T |
|
| Q |
213 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932273 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
6932205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 508537 - 508269
Alignment:
| Q |
13 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagnnnnnnntcggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
508537 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagaaaaaaatcggt |
508438 |
T |
|
| Q |
113 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctaatttggtcttgtagttcaaataattccgtaccatgaagtatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
508437 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctgatttggtcttgtagtccaaataattccgtaccatgaagtatct |
508338 |
T |
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| Q |
213 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508337 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
508269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 8241207 - 8241253
Alignment:
| Q |
153 |
tcttgctcaataatctaatttggtcttgtagttcaaataattccgta |
199 |
Q |
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||||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
8241207 |
tcttgctcaataatcagatttggtcttgtagtccagataattccgta |
8241253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 8241253 - 8241283
Alignment:
| Q |
251 |
aactatcaaagtaattccatccccaacagtc |
281 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8241253 |
aactatcaaagtaattccatccccaacagtc |
8241283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 14545023 - 14544755
Alignment:
| Q |
13 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagnnnnnnntcggt |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
14545023 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatgaaagaaaaaaatcggt |
14544924 |
T |
|
| Q |
113 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctaatttggtcttgtagttcaaataattccgtaccatgaagtatct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14544923 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctgatttggtcttgtagtccaaataattccgtaccatgaagtatct |
14544824 |
T |
|
| Q |
213 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544823 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
14544755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 26291147 - 26290879
Alignment:
| Q |
13 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagnnnnnnntcggt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
26291147 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatgaaagaaaaaaatcggt |
26291048 |
T |
|
| Q |
113 |
tgataaatgaattccaatttgttgactagtacttatcaaatcttgctcaataatctaatttggtcttgtagttcaaataattccgtaccatgaagtatct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26291047 |
tgataaatgaattccaatttgttgactagtacttgtcaaatcttgctcaataatctgatttggtcttgtagtcaaaataattctgtaccatgaagtatct |
26290948 |
T |
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| Q |
213 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26290947 |
gaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaacagtc |
26290879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 18290792 - 18290875
Alignment:
| Q |
13 |
attctataaagattttttactggcgagctacaacaattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatg |
96 |
Q |
| |
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||||||| |||||||| || ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18290792 |
attctattaagattttctattggcgagctacgacaattgcacatatcaaagcaactaaaataattattgaaattagttcaaatg |
18290875 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 39324400 - 39324494
Alignment:
| Q |
182 |
agttcaaataattccgtaccatgaagtatctgaaataatagttattagtgaaacaaaaatacttgtacaaactatcaaagtaattccatccccaa |
276 |
Q |
| |
|
||||||||||||| |||| |||| ||||||| | ||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
39324400 |
agttcaaataatttggtacaatgatgtatctggagtaatatttattattgaaacaaaaatacatgtacaaactatcaaaataattccatccccaa |
39324494 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 9195291 - 9195238
Alignment:
| Q |
181 |
tagttcaaataattccgtaccatgaagtatctgaaataatagttattagtgaaa |
234 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9195291 |
tagtccaaataattccgtaccatgaagtatctgaaataatagttattagtgaaa |
9195238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 169983 - 169796
Alignment:
| Q |
47 |
aattgcacctatcaaagcaactaaaagaattattgaaattagttcaaatggaagnnnnnnntcggttgataaatgaattccaatttgttgactagtactt |
146 |
Q |
| |
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|||||||||||| |||| ||||| ||||||||| ||||| |||||||| ||||| ||||||| |||||||||||||||||||||| | || || |
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| T |
169983 |
aattgcacctattaaagaaactagaagaattatggaaatgagttcaaacggaagataaaaatcggttgctaaatgaattccaatttgttgaacattattt |
169884 |
T |
|
| Q |
147 |
atcaaatcttgctcaataatctaatttggtcttgtagttcaaataattccgtaccatgaagtatctgaaataatagttattagtgaaa |
234 |
Q |
| |
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|| | | | || || | || | |||| ||||||||| |||| |||||| |||||||| ||||||| ||| |||| |||||||||| |
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| T |
169883 |
atgagaccctgttctactatttggtttgatcttgtagtccaaagaattccataccatgacgtatctgggatagtagtcattagtgaaa |
169796 |
T |
|
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