View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_low_11 (Length: 343)
Name: NF20202_low_11
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 9451573 - 9451893
Alignment:
| Q |
1 |
aaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattta |
100 |
Q |
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| T |
9451573 |
aaactaacagtgtatttttatttagtttggtttatatcctccagatttctattacagttaatccaaacaaaacaagttttgtgacaattgaaatcattta |
9451672 |
T |
|
| Q |
101 |
tacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatttc |
200 |
Q |
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| T |
9451673 |
tacaacattgtatacaaatatgcttttatgtatacaatatgcaacttctgcgaaaattgaaatgatttatacatagttgatatttattataacatatttc |
9451772 |
T |
|
| Q |
201 |
tacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttttt |
300 |
Q |
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| T |
9451773 |
tacggttaatccaaacacaacaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatccttttt |
9451872 |
T |
|
| Q |
301 |
cttgttaaatgggaaaggtct |
321 |
Q |
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| T |
9451873 |
cttgttaaatgggaaaggtct |
9451893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 321
Target Start/End: Original strand, 9440567 - 9440667
Alignment:
| Q |
220 |
acaagttttgtgttgaacaaaatgacataacagtcaagccatctcttgcactttctccttccctttgtcgtcatcctttttcttgttaaatgggaaaggt |
319 |
Q |
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| T |
9440567 |
acaagttgtgtcttgaacaaaa-gacataacaatcaagctatgtgtttcacttcctccttccctttgtcatcatcctttttcttgttaaatgggaaaggt |
9440665 |
T |
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| Q |
320 |
ct |
321 |
Q |
| |
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|| |
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| T |
9440666 |
ct |
9440667 |
T |
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