View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_low_13 (Length: 321)
Name: NF20202_low_13
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_13 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-178
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 55573308 - 55573622
Alignment:
| Q |
7 |
acaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcagga |
106 |
Q |
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| T |
55573308 |
acaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcagga |
55573407 |
T |
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| Q |
107 |
agaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctgtt |
206 |
Q |
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| T |
55573408 |
agaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctgtt |
55573507 |
T |
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| Q |
207 |
gctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattcaagtctgaagttgctttactctcacgtctctttc |
306 |
Q |
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| T |
55573508 |
gctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattcaagtctgaagttgctttactctcacgtctctttc |
55573607 |
T |
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| Q |
307 |
atcctaacatagtgc |
321 |
Q |
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| T |
55573608 |
atcctaacatagtgc |
55573622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 1359827 - 1360092
Alignment:
| Q |
7 |
acaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaatgtcgaaacgtgggaagcttcaaaggaagatcagga |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| | |||||| |
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| T |
1359827 |
acaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggattttgagaatgtcgaaatgtgggaagcttcaaaggagggtcagga |
1359926 |
T |
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| Q |
107 |
agaatggactgctgatctttctcaacttttcataggtaacaagtttgcgtccggtgctcacagtcgaatttaccgtggaatttacaagcagagagctgtt |
206 |
Q |
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| T |
1359927 |
agaatggactgctgatctttctcagcttttcatcggtaacaagtttgcgtccggtgctcacagtcggatttaccgtggaatttacaagcagagagctgtt |
1360026 |
T |
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| Q |
207 |
gctgttaaaatggtgaggattcctactcagaatgaggagagaagaacattgctagaacagcaattc |
272 |
Q |
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| T |
1360027 |
gctgttaaaatggtgaggattccaactcagaatgaggagagaagaacattgctagaacaacaattc |
1360092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 33035684 - 33035733
Alignment:
| Q |
22 |
aaagatttgatagtttagaatcatggtccatgatattggactctgagaat |
71 |
Q |
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| T |
33035684 |
aaagatttgatagtttagaattatggtccatgatattggactctgagaat |
33035733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 30845146 - 30845084
Alignment:
| Q |
7 |
acaacatggaaagaaaaagatttgatagtttagaatcatggtccatgatattggactctgagaat |
71 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||| |
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| T |
30845146 |
acaacatggaaagaaaaagatttgatagcttagaatcatggtctatg--attggactctaagaat |
30845084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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