View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_low_19 (Length: 239)
Name: NF20202_low_19
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 35784228 - 35784007
Alignment:
| Q |
5 |
cacctatttgaaaatatgataccaaatcaaattagagaaattgcatttgcaaaacaggtgatcctcatcctccaacacccc---gaaacgccacacacaa |
101 |
Q |
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| T |
35784228 |
cacctatttgaaaatatgataccaaatcaaattagagaaattgcatttgcaaaacaggtgatcctcatcctccaacacccccccgaaacgccacacacaa |
35784129 |
T |
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| Q |
102 |
tccaaatgtatatgtgactttgtagtttgtgtgctagttctt-agtggtatttgtcgtctgtaaaaggacataggaaagtataactttcatattttctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35784128 |
tccaaatgtatatgtgactttgtagtttgtgtgctagttttttagtggtatttgtcgtctgtaaaaggacataggaaagtataactttcatattttctta |
35784029 |
T |
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| Q |
201 |
caagttgatattttattctaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35784028 |
caagttgatattttattctaaa |
35784007 |
T |
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