View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_low_2 (Length: 640)
Name: NF20202_low_2
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 11 - 624
Target Start/End: Original strand, 41622560 - 41623173
Alignment:
| Q |
11 |
catcatcacagatgcaaaacttgtgcatgaagctttcattcaaaaaggtgctctctatgcatctagaccacctgagaatccaacaaggaacatattcagt |
110 |
Q |
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| T |
41622560 |
catcatcacagatgcaaaacttgtgcatgaagctttcattcaaaagggtgctctctatgcatctagaccacctgagaatccaacaaggaacatattcagt |
41622659 |
T |
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| Q |
111 |
gccaacaagttcactgtgaatgctgcagtttatggtccagtttggaaatcactgagaagaaacatggttcagaacatgctgagttcaactagactcaagg |
210 |
Q |
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| T |
41622660 |
gcaaacaagttcactgtgaatgctgcagtttatggtcctgtttggaaatcactaagaagaaacatggttcagaacatgctgagttcaactagactcaagg |
41622759 |
T |
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| Q |
211 |
agtttaaaagtgttagagacaaagcaatggataaactcatcaataggcttaaagttaatgctgagaataacaatggcgttgttattgttgtcagagatgc |
310 |
Q |
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| T |
41622760 |
agtttaaaagtgttagagacaaagcaatggataaactcatcaataggcttaaagttaatgctgagaataacaatggcgttgttattgttgtcagagatgc |
41622859 |
T |
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| Q |
311 |
aaggtttgctgttttttgcatacttgttgttatgtgttttggtttagaaatggatgaagaaaaacttgagagaatagatcaagttatgaagaatgtccta |
410 |
Q |
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| T |
41622860 |
aaggtttgctgttttttgcatacttgttgttatgtgttttggtttagaaatggatgaagaaaaacttgagagaatagatcaagttatgaagaatgtccta |
41622959 |
T |
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| Q |
411 |
atcactttagatccaagaattgatgactttttaccaatcctaagcgtgtttttctctaaacaaagaacgagagctttggaagttcgcaaagaacaagtcg |
510 |
Q |
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| T |
41622960 |
atcactttagatccaagaattgatgactttttaccaatcctaagcgtgtttttctctaaacaaagaaagagagctttggaagttcgcaaagaacaagtcg |
41623059 |
T |
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| Q |
511 |
aattcctagttcctttcattgaacaaagaaggagagcatttcaaaaccctggttcagatcaaacagctacaacattttcatacttagacacactttttga |
610 |
Q |
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| T |
41623060 |
aattcctagttcctttcattgaacaaagaaggagagcatttcaaaaccctggttcagatcaaacagctacaacattttcatacttagacacactttttga |
41623159 |
T |
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| Q |
611 |
tatcaaagttcatg |
624 |
Q |
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| T |
41623160 |
tatcaaagttcatg |
41623173 |
T |
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