View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20202_low_20 (Length: 239)

Name: NF20202_low_20
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20202_low_20
NF20202_low_20
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-226)||(221857-222082)
[»] chr7 (5 HSPs)
chr7 (9-173)||(47556199-47556363)
chr7 (9-173)||(22862895-22863059)
chr7 (86-224)||(20695241-20695379)
chr7 (86-224)||(20700719-20700857)
chr7 (4-162)||(12124506-12124664)
[»] chr8 (1 HSPs)
chr8 (9-173)||(10798829-10798993)
[»] chr4 (2 HSPs)
chr4 (2-171)||(17823923-17824092)
chr4 (4-48)||(15646310-15646354)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-224)||(50121-50344)
scaffold0032 (118-221)||(52936-53039)
[»] chr6 (1 HSPs)
chr6 (9-157)||(5388673-5388821)
[»] chr3 (3 HSPs)
chr3 (4-162)||(17150954-17151112)
chr3 (127-224)||(23824437-23824534)
chr3 (9-47)||(23824603-23824641)
[»] chr2 (1 HSPs)
chr2 (9-48)||(21967628-21967667)


Alignment Details
Target: scaffold0003 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 221857 - 222082
Alignment:
Q  1 ataaaaagtaatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  221857 ataaaaagtaatgaagtgttttgtttggcaaatatttatgctccttgcgatagtagtggtcgccaggttttgtggggtgctttgactaatttgattcagt 221956  T
Q  101 tacatggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattccttatctgcagaata 200  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  221957 tacatggggaagctgtgtggtgtgttcttggtgattttaatgtcgttcggtctagtgaagaacgaagaggtcgagtagacaattccttatctgcagaata 222056  T
Q  201 tgttccttttaatcagttcattgatg 226  Q
    ||||||||||||||||||||||||||    
T  222057 tgttccttttaatcagttcattgatg 222082  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 47556363 - 47556199
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttacatggg 108  Q
    |||||| ||||| |||||||| |||||||||| |||||| |||||||| || || || |  ||||||| | ||||| |||||||| |||  |||||||||    
T  47556363 taatgaggtgttctgtttggcgaatatttatgctccttgtgatagtagggggcgacaggtgttgtgggattctttgtctaatttgtttcctttacatggg 47556264  T
Q  109 gaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcg 173  Q
    ||||  |||||||||||||||||||| ||||||| |||||| |||||||  ||| ||||||||||    
T  47556263 gaagcggtgtggtgtgttcttggtgactttaatgatgttcgttctagtgctgaaagaagaggtcg 47556199  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 22862895 - 22863059
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttacatggg 108  Q
    |||||| ||||| |||||||| |||||||||| | |||| |||||||| || || || |  ||||||| | ||||| |||||||| |||  |||||||||    
T  22862895 taatgaggtgttctgtttggcgaatatttatgcttcttgtgatagtagggggcgacaggtgttgtgggattctttgtctaatttgtttcctttacatggg 22862994  T
Q  109 gaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcg 173  Q
    ||||  |  ||||||||||||||||||||||||| |||||| |||||||  ||| ||||||||||    
T  22862995 gaagcggcttggtgtgttcttggtgattttaatggtgttcgttctagtgctgaaagaagaggtcg 22863059  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 20695241 - 20695379
Alignment:
Q  86 ctaatttgattcagttacatggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattc 185  Q
    |||||||||||||| ||||||  |||| ||  |||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||  || |||||    
T  20695241 ctaatttgattcaggtacatgatgaagctgcttggtgtattcttggtgattttaatgtcgttcggtctagtgaagaaagaagagggcgagcggataattc 20695340  T
Q  186 cttatctgcagaatatgttccttttaatcagttcattga 224  Q
     |  | ||  || |||| |||||||||||||||||||||    
T  20695341 ttcttatggtgattatgctccttttaatcagttcattga 20695379  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 224
Target Start/End: Original strand, 20700719 - 20700857
Alignment:
Q  86 ctaatttgattcagttacatggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattc 185  Q
    |||||||||||||| ||||||  |||| ||  |||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||  || |||||    
T  20700719 ctaatttgattcaggtacatgatgaagctgcttggtgtattcttggtgattttaatgtcgttcggtctagtgaagaaagaagagggcgagcggataattc 20700818  T
Q  186 cttatctgcagaatatgttccttttaatcagttcattga 224  Q
     |  | ||  || |||| |||||||||||||||||||||    
T  20700819 ttcttatggtgattatgctccttttaatcagttcattga 20700857  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 12124664 - 12124506
Alignment:
Q  4 aaaagtaatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttac 103  Q
    |||| ||||||| |||||||||||| ||||||||||| ||||||| ||| ||| || |||||   ||||||||  ||| |  |||||||| |   | | |    
T  12124664 aaaaataatgaaatgttttgtttggtaaatatttatgctccttgcaataatagggggcgccagcttttgtgggaagctatctctaatttgttcttggttc 12124565  T
Q  104 atggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaa 162  Q
    |||| || || |  |||||||| |||||||| || |||||||| || ||||||||||||    
T  12124564 atggagatgtagcttggtgtgtgcttggtgacttcaatgttgtgcgttctagtgaagaa 12124506  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 10798829 - 10798993
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttacatggg 108  Q
    |||||| |||||  ||||||| |||||||||| |||||| |||||||| || || || |  ||||||| | ||||| |||||||| |||  |||||||||    
T  10798829 taatgaggtgttcagtttggcgaatatttatgctccttgtgatagtagggggcgacaagtgttgtgggattctttgtctaatttgtttcctttacatggg 10798928  T
Q  109 gaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcg 173  Q
    ||||  |  ||||||||||||||||| ||||||| |||||| |||||||  ||| ||||||||||    
T  10798929 gaagcggcttggtgtgttcttggtgactttaatgatgttcgttctagtgctgaaagaagaggtcg 10798993  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 17823923 - 17824092
Alignment:
Q  2 taaaaagtaatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagtt 101  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||  ||| ||| || || || | |||||||| |||  |  |||||||| ||| | |    
T  17823923 taaaaaataatgaaatgttttgtttggcaaatatttatgctccttgtaataataggggacgtcaggttttgtgggatgcggtctctaatttgtttctggt 17824022  T
Q  102 acatggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggt 171  Q
    ||| || || || |  |||||||| |||||||| |||||||| ||||| |||||||||||| ||||||||    
T  17824023 acacggtgatgtagcttggtgtgtgcttggtgactttaatgtcgttcgttctagtgaagaaagaagaggt 17824092  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 15646310 - 15646354
Alignment:
Q  4 aaaagtaatgaagtgttttgtttggcaaatatttatggtccttgc 48  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  15646310 aaaaataatgaagtgttttgtttggcaaatatttatgctccttgc 15646354  T

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Target: scaffold0032 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 50121 - 50344
Alignment:
Q  1 ataaaaagtaatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagt 100  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||| || || || | | ||||||  ||| |  |||||||| | |  |    
T  50121 ataaaaaataatgaagtgttttgtttggcaaatatttatgctccttgtgataatagggggcgacaggttctgtgggacgctgtctctaatttgctactat 50220  T
Q  101 tacatggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattccttatctgcagaata 200  Q
    |||| || || || |  |||| ||| ||||| || |||||||| ||||| |||||||||||| ||||||| ||  | || ||| |||| | ||  || ||    
T  50221 tacacggtgatgtggcttggtttgtgcttggcgactttaatgtcgttcgttctagtgaagaaagaagaggccgttttgaaaataccttttatgttgacta 50320  T
Q  201 tgttccttttaatcagttcattga 224  Q
    || |||||||||||||||||||||    
T  50321 tgctccttttaatcagttcattga 50344  T

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Target: scaffold0032; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 52936 - 53039
Alignment:
Q  118 tggtgtgttcttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattccttatctgcagaatatgttccttttaatcagt 217  Q
    |||||||| |||||||| |||||||| ||||| |||||||||||| ||||||| ||  | || ||| |||| | ||  || |||| ||||||||||||||    
T  52936 tggtgtgtgcttggtgactttaatgtcgttcgttctagtgaagaaagaagaggccgttttgaaaataccttttatgttgactatgctccttttaatcagt 53035  T
Q  218 tcat 221  Q
    ||||    
T  53036 tcat 53039  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 5388673 - 5388821
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttacatggg 108  Q
    |||||| ||||| |||||||| ||| |||||| |||||| || ||||| || |  || |  ||||||| | ||||| |||||||| |||  ||||||||     
T  5388673 taatgaggtgttctgtttggcgaatgtttatgctccttgtgacagtagggggcatcaggtgttgtgggattctttgtctaatttgtttccattacatgga 5388772  T
Q  109 gaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtg 157  Q
    ||||  |  ||||||||||||||||||||||||| |||||| |||||||    
T  5388773 gaagcggcttggtgtgttcttggtgattttaatgatgttcgttctagtg 5388821  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 17150954 - 17151112
Alignment:
Q  4 aaaagtaatgaagtgttttgtttggcaaatatttatggtccttgcgatagtagtggtcgccatgctttgtggggtgctttgactaatttgattcagttac 103  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||| ||| ||| || || ||   ||||||||  ||| |  |||||||| |   | | |    
T  17150954 aaaaataatgaagtgttttgtttggtaaatatttatgctccttgcaatattagggggcgtcagagtttgtgggaagctgtctctaatttgttcttggttc 17151053  T
Q  104 atggggaagttgtgtggtgtgttcttggtgattttaatgttgttcggtctagtgaagaa 162  Q
    |||| || || |  |||||||| |||||||| ||||||||||||||  |||||||||||    
T  17151054 atggtgatgtagcttggtgtgtgcttggtgactttaatgttgttcgaactagtgaagaa 17151112  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 23824534 - 23824437
Alignment:
Q  127 cttggtgattttaatgttgttcggtctagtgaagaacgaagaggtcgagtagacaattccttatctgcagaatatgttccttttaatcagttcattga 224  Q
    |||||||| |||||||||||||| || ||||||||| || ||||||| || || |||||||| ||  | || |||| | |||| ||||||||||||||    
T  23824534 cttggtgactttaatgttgttcgttcaagtgaagaaagacgaggtcgtgttgataattccttttcaactgactatgatactttcaatcagttcattga 23824437  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 23824641 - 23824603
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttg 47  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  23824641 taatgaagtgttttgtttggcaaatatatatgctccttg 23824603  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 21967667 - 21967628
Alignment:
Q  9 taatgaagtgttttgtttggcaaatatttatggtccttgc 48  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  21967667 taatgaagtgttttgtttggtaaatatttatgctccttgc 21967628  T

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