View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20202_low_21 (Length: 237)

Name: NF20202_low_21
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20202_low_21
NF20202_low_21
[»] chr7 (6 HSPs)
chr7 (1-218)||(2333922-2334139)
chr7 (65-220)||(41482419-41482572)
chr7 (77-222)||(23318950-23319092)
chr7 (77-220)||(39644867-39645007)
chr7 (52-150)||(24429720-24429821)
chr7 (73-173)||(39594642-39594742)
[»] chr1 (7 HSPs)
chr1 (62-222)||(26793718-26793876)
chr1 (77-222)||(50004908-50005050)
chr1 (73-212)||(19806764-19806902)
chr1 (84-212)||(4076365-4076490)
chr1 (62-173)||(9383223-9383335)
chr1 (61-184)||(6768258-6768382)
chr1 (73-173)||(49236174-49236274)
[»] chr4 (9 HSPs)
chr4 (61-218)||(45413765-45413920)
chr4 (63-173)||(36625533-36625644)
chr4 (65-173)||(2183302-2183411)
chr4 (73-173)||(19181421-19181521)
chr4 (62-173)||(43481302-43481412)
chr4 (72-171)||(44126013-44126112)
chr4 (62-150)||(34666439-34666528)
chr4 (65-171)||(26635260-26635367)
chr4 (84-150)||(24155198-24155264)
[»] chr2 (4 HSPs)
chr2 (62-220)||(40626432-40626588)
chr2 (77-172)||(6452471-6452566)
chr2 (78-218)||(6457563-6457700)
chr2 (77-173)||(18665167-18665263)
[»] chr6 (4 HSPs)
chr6 (73-172)||(8547443-8547542)
chr6 (73-150)||(8573796-8573873)
chr6 (53-219)||(18596615-18596779)
chr6 (73-149)||(129107-129183)
[»] chr8 (5 HSPs)
chr8 (84-173)||(31734323-31734412)
chr8 (77-151)||(11066512-11066586)
chr8 (73-173)||(9028642-9028742)
chr8 (73-182)||(22573133-22573242)
chr8 (73-150)||(556809-556888)
[»] chr3 (3 HSPs)
chr3 (73-222)||(38457694-38457844)
chr3 (63-171)||(7038613-7038722)
chr3 (88-220)||(48936324-48936451)
[»] chr5 (2 HSPs)
chr5 (77-150)||(13109739-13109812)
chr5 (73-173)||(34731276-34731376)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 2333922 - 2334139
Alignment:
Q  1 actagaagcaataggagtcgaaggaggtttttgaggaatatagaatacgcttgtttgatagttatgctatcagttgctaaccaaccaaaaaccaaggata 100  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||    
T  2333922 actagaagcaatgagagtcgaaggaagtttttgaggaatatagaatacgcgtgtttgatagttatgctatcggttgctaaccaaccaaaaaccagagata 2334021  T
Q  101 aaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatattcaagatatgatag 200  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||    
T  2334022 aaaataacaaaaggtgaataggataggattaaaaataggtttaagttatccaatcctattggtgcaccaaacaccggattgaatattcaggatatgatag 2334121  T
Q  201 tgttatcatatcatgtct 218  Q
    ||||||||||||||||||    
T  2334122 tgttatcatatcatgtct 2334139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 220
Target Start/End: Original strand, 41482419 - 41482572
Alignment:
Q  65 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 163  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||  || | |||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggt 41482518  T
Q  164 gcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 220  Q
    |||||||||| |  ||| ||   ||| || |||||||| ||||| ||||||||||||    
T  41482519 gcaccaaacagcgcattaaa---tcaggagatgatagttttatcctatcatgtcttc 41482572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 23318950 - 23319092
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 176  Q
    |||||| | |||||||||||||||||||| |||||   | ||||||||||||||  |||||||||||| ||||||  || | |||||| |||||||| |     
T  23318950 ctaacccatcaaaaaccaaggataaaaattacaaaggctcaataggataggattaaaaataggtttaaattatcctttcatgttggtggaccaaacaaca 23319049  T
Q  177 gattgaatattcaagatatgatagtgttatcatatcatgtcttctt 222  Q
    ||||   || ||| |||||||||||||||||||||| |||||||||    
T  23319050 gatt---taatcaggatatgatagtgttatcatatcctgtcttctt 23319092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 220
Target Start/End: Complemental strand, 39645007 - 39644867
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 176  Q
    |||||| ||||||||| ||||||||||||||||||   ||| ||||||||||||  |||| ||||||||||||||  |  |||||| |||||||||| |     
T  39645007 ctaacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggattataaatgggtttaagttatccttttctattggcgcaccaaacaaca 39644908  T
Q  177 gattgaatattcaagatatgatagtgttatcatatcatgtcttc 220  Q
     |||||| ||  | ||||||||||| |||||||||| |||||||    
T  39644907 aattgaa-at--atgatatgatagttttatcatatcctgtcttc 39644867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 24429821 - 24429720
Alignment:
Q  52 tgtttgatag--ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagtta 148  Q
    ||||||||||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||  |||| || |||||||||  |||||| ||||| |||    
T  24429821 tgtttgatagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaatta 24429722  T
Q  149 tc 150  Q
    ||    
T  24429721 tc 24429720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 39594742 - 39594642
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||||| | ||||||| |||||||||||| |||||   |||||| |||| |||| | ||||||||||| ||| |  ||||||||||||||||||||    
T  39594742 gttgctaacccatcaaaaactaaggataaaaattacaaaggatgaatatgataagattagtaataggtttaatttagcatatcttattggtgcaccaaac 39594643  T
Q  173 a 173  Q
    |    
T  39594642 a 39594642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 26793876 - 26793718
Alignment:
Q  62 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 160  Q
    |||||||||||| ||||||||| ||||||||| ||| ||||||||||||||   ||| |||||||||||| |||||| |||||||||||||  |  ||||    
T  26793876 ttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctatt 26793777  T
Q  161 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttctt 222  Q
    ||||||||||||| | |||||||   ||| |||||||||||  |||||||||||||||||||    
T  26793776 ggtgcaccaaacaacggattgaa---tcaggatatgatagttctatcatatcatgtcttctt 26793718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 50004908 - 50005050
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacct 176  Q
    |||||| ||||||||| ||||||||||||||||||  |||| |||||||||||| ||||||||||||| ||||||  | |||||||||||||||||| |     
T  50004908 ctaacccaccaaaaactaaggataaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaacatca 50005007  T
Q  177 gattgaatattcaagatatgatagtgttatcatatcatgtcttctt 222  Q
     |||  | ||| ||||||||||||| |||||||||| | |||||||    
T  50005008 aatt--agatt-aagatatgatagttttatcatatcctatcttctt 50005050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 19806764 - 19806902
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgc--accaa 170  Q
    |||| ||||| ||||||||| |||||| | || ||||||  ||||||||||||||||| ||||||||||||| ||||||  || ||||| |||  |||||    
T  19806764 gttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggattagaaataggtttaatttatcctttcctattgatgcaaaccaa 19806863  T
Q  171 acacctgattgaatattcaagatatgatagtgttatcatatc 212  Q
    ||||| |||||||||   | |||| |||||||||||||||||    
T  19806864 acaccagattgaata---aggataggatagtgttatcatatc 19806902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 4076365 - 4076490
Alignment:
Q  84 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaa 183  Q
    ||||||||| |||||| | || ||||||  ||||||||||||||||| | ||||||||||| ||||||  || ||||| ||||||||||||| |||| ||    
T  4076365 accaaaaactaaggattagaaaaacaaagagtgaataggataggattagtaataggtttaatttatcctttcctattgatgcaccaaacaccagattaaa 4076464  T
Q  184 tattcaagatatgatagtgttatcatatc 212  Q
    ||   | | ||||||||||||||||||||    
T  4076465 ta---agggtatgatagtgttatcatatc 4076490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 9383223 - 9383335
Alignment:
Q  62 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 160  Q
    |||||||||||| ||||||||| | ||||||  |||||| |||||||||||  |||| ||||||| |||| ||||| ||||||| ||||||  || ||||    
T  9383223 ttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggataagattagaaattggtttaatttatccgttcctatt 9383322  T
Q  161 ggtgcaccaaaca 173  Q
    |||||||||||||    
T  9383323 ggtgcaccaaaca 9383335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 6768382 - 6768258
Alignment:
Q  61 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 159  Q
    ||||||||||||| || |||||| ||||||||  ||||||||||||||||||   || |||| |||||||  |||||| |||||| |||||   |  |||    
T  6768382 gttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggataggaaataagtttaatttatcattttctat 6768283  T
Q  160 tggtgcaccaaacacctgattgaat 184  Q
    |||| ||||||||| | ||||||||    
T  6768282 tggtacaccaaacaacagattgaat 6768258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 49236274 - 49236174
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||||| |||||||||||||||||  ||||| |||   ||  ||||||||||   |||||| |||||| ||||||  |  ||||||||||||||||    
T  49236274 gttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggataggaaatgaaatatgtttaatttatccttttctattggtgcaccaaac 49236175  T
Q  173 a 173  Q
    |    
T  49236174 a 49236174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 45413765 - 45413920
Alignment:
Q  61 gttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttat 159  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||   |  ||||||||||||  ||||||||||||| ||||||  || |||    
T  45413765 gttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggataggaaataggtttaatttatcctttcctat 45413864  T
Q  160 tggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtct 218  Q
    |||||||||||||| | |||||||   |||||||||||||||  |||| |||| |||||    
T  45413865 tggtgcaccaaacaaccgattgaa---tcaagatatgatagttctatcctatcctgtct 45413920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 36625533 - 36625644
Alignment:
Q  63 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 161  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| |||||  ||||||||||||||||||| ||||||||||| |||||  ||| ||||     
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggattcgtaataggtttaatttatcatatcctatta 36625632  T
Q  162 gtgcaccaaaca 173  Q
    ||||||||||||    
T  36625633 gtgcaccaaaca 36625644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 2183411 - 2183302
Alignment:
Q  65 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 163  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||   || ||||||||||||| |||||  |||||| ||||||  |  |||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggattggaaatgagtttaatttatccttttctattggt 2183312  T
Q  164 gcaccaaaca 173  Q
    ||||||||||    
T  2183311 gcaccaaaca 2183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 19181421 - 19181521
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||| | ||||||||| ||||| |||||||| |||   ||| |||||||||||| ||||||||||||| |||||  ||| | ||||||||||||||    
T  19181421 gttgctaatccaccaaaaactaaggacaaaaataataaaggatgagtaggataggattagaaataggtttaatttatcatatcatgttggtgcaccaaac 19181520  T
Q  173 a 173  Q
    |    
T  19181521 a 19181521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 43481302 - 43481412
Alignment:
Q  62 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 160  Q
    |||||||||||| ||||||| | | ||||||| | |||||||||||| |||| ||||||| ||| ||||| |||||  |||||| ||||||  |||||||    
T  43481302 ttatgctatcaggttgctaatccaacaaaaacta-ggataaaaataataaaaggtgaataagat-ggattagaaatgagtttaatttatcctttcttatt 43481399  T
Q  161 ggtgcaccaaaca 173  Q
    |||||||||||||    
T  43481400 ggtgcaccaaaca 43481412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 44126112 - 44126013
Alignment:
Q  72 agttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaa 171  Q
    ||||||||||| | ||||||| ||| || | || ||||||| ||||||||||||||||| |||||| |||||| |||||   || ||||| |||||||||    
T  44126112 agttgctaacccatcaaaaacaaagaattagaaaaacaaaaggtgaataggataggattagaaataagtttaatttatcatttcctattgctgcaccaaa 44126013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 34666528 - 34666439
Alignment:
Q  62 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 150  Q
    |||||||||||| ||||||||| || ||||   | |||||||||||| |||  | |||||||||| |||| |||||||||||||||||||    
T  34666528 ttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggatatgattagaaataggtttaagttatc 34666439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 26635260 - 26635367
Alignment:
Q  65 tgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggt 163  Q
    ||||||||| ||||||||| ||||||||| |||||||| ||||| |||    || |||||||| ||| |||||||||| || |||||  ||| | |||||    
T  26635260 tgctatcaggttgctaacccaccaaaaactaaggataagaataataaaggaggagtaggatagaattggaaataggttaaatttatcatatcatgttggt 26635359  T
Q  164 gcaccaaa 171  Q
    ||||||||    
T  26635360 gcaccaaa 26635367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 24155264 - 24155198
Alignment:
Q  84 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 150  Q
    ||||||||| |||||| |||||| ||||   ||| |||||||||||| ||||||| |||||||||||    
T  24155264 accaaaaactaaggatgaaaatatcaaatgctgagtaggataggattagaaatagctttaagttatc 24155198  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 40626588 - 40626432
Alignment:
Q  62 ttatgctatcag-ttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttatt 160  Q
    |||||||||||| ||| ||||| |||||||   |||||||||||||| |||  |||| |||||||||||| ||||||  ||||| ||||||  || ||||    
T  40626588 ttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctatt 40626489  T
Q  161 ggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttc 220  Q
    ||||||||||||| | |||||||   ||||||||||||||| |||||||||| |||||||    
T  40626488 ggtgcaccaaacagcagattgaa---tcaagatatgatagttttatcatatcctgtcttc 40626432  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 6452566 - 6452471
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||| | ||||||| |||||| | ||| |||||  |||||||||||| |||| | ||||||||||| |||||  |||||||||||||| |||||    
T  6452566 ctaacccaacaaaaactaaggattagaattacaaagcgtgaataggataagattagtaataggtttaatttatcatatcttattggtgcatcaaac 6452471  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 6457700 - 6457563
Alignment:
Q  78 taaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctg 177  Q
    ||||| ||||||||  ||||||||||||||||||  ||| ||| |||| |||| ||||| | ||||| |||||   |  ||||||||||||||||| | |    
T  6457700 taacccaccaaaaattaaggataaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaacaacag 6457601  T
Q  178 attgaatattcaagatatgatagtgttatcatatcatgtct 218  Q
    ||||||   ||| |||||||||||  ||||||||| |||||    
T  6457600 attgaa---tcatgatatgatagttctatcatatcctgtct 6457563  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 18665263 - 18665167
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 173  Q
    |||||| ||||||||  |||||||||| |||||||  |||| || ||||  ||| ||||||||||||||||||||  || | ||||||||| |||||    
T  18665263 ctaacccaccaaaaattaaggataaaattaacaaagggtgagtaagatattattagaaataggtttaagttatcctttccttttggtgcacgaaaca 18665167  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 8547443 - 8547542
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| ||||||||||||||||||||  || ||||| ||| ||||||    
T  8547443 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcctttcctattgatgctccaaac 8547542  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 8573796 - 8573873
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 150  Q
    |||||||||| ||||||||| ||| ||||||||||||||  ||||||| |||| |||| |||||||||||||||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatc 8573873  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 18596615 - 18596779
Alignment:
Q  53 gtttgatagttatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 151  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||||||||| ||| |||  ||   || || ||||||  |||||||||||| |||||     
T  18596615 gtttgatagttatgatattatgttgctaacccaccaaaaactaaggataaaagtaataaagggttggtatgaaaggattaaaaataggtttaaattatca 18596714  T
Q  152 aatcttattggtgcaccaaacacctgattgaatattcaagatatgatagtgttatcatatcatgtctt 219  Q
      ||||| | || || | |||| |  |||||||   |||||||||||||| |||||||||||||||||    
T  18596715 tttcttactagtacatcgaacatcaaattgaat---caagatatgatagttttatcatatcatgtctt 18596779  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 129107 - 129183
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttat 149  Q
    ||||||| || | ||||||| || |||||||||||||||  ||||||| |||||||||  ||||  |||||||||||    
T  129107 gttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggattaaaaatgagtttaagttat 129183  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 31734412 - 31734323
Alignment:
Q  84 accaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaaca 173  Q
    ||||||||| ||||||||||||||||||  ||| || ||||| |||| ||||||||||||| |||||   ||||||||||||||||||||    
T  31734412 accaaaaactaaggataaaaataacaaagggtggatgggataagattggaaataggtttaatttatcatttcttattggtgcaccaaaca 31734323  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 11066586 - 11066512
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatcc 151  Q
    |||||| ||||||||  ||||||||||||||||||   ||| |||||||||||| ||||||||||||||||||||    
T  11066586 ctaacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggattagaaataggtttaagttatcc 11066512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 9028642 - 9028742
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||||| | |||||||||||||||| ||| |||||   | ||||||||||||||  |||||||||||| ||||||  |  | ||||||||||||||    
T  9028642 gttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggattaaaaataggtttaaattatccttttatgttggtgcaccaaac 9028741  T
Q  173 a 173  Q
    |    
T  9028742 a 9028742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 22573242 - 22573133
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||| ||||| ||||||||| |||||||| ||| |||||   | |||||||||||||| |||| ||||| || |||||   || | ||||||||||||||    
T  22573242 gttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggattagaaacaggttaaacttatcatttcctgttggtgcaccaaac 22573143  T
Q  173 acctgattga 182  Q
    | | ||||||    
T  22573142 aacggattga 22573133  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 556888 - 556809
Alignment:
Q  73 gttgctaaccaaccaaaaa--ccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 150  Q
    |||||||||| ||||||||  | |||||| | || ||||||  |||||||||||| |||| ||||||||||||| |||||    
T  556888 gttgctaacccaccaaaaaaacaaaggattagaaaaacaaagggtgaataggatatgattagaaataggtttaatttatc 556809  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 222
Target Start/End: Complemental strand, 38457844 - 38457694
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatct----tattggtgcacc 168  Q
    |||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||| |||||  |||||| ||||||  |||    ||||| ||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggattagaaatgagtttaaattatcctttcttatgtattgatgcacc 38457745  T
Q  169 aaacacctgattgaatattcaagatatgatagtgttatcatatcatgtcttctt 222  Q
    ||||  | ||||||| ||  ||||||  ||||| ||||||||||||||||||||    
T  38457744 aaacggcggattgaa-at--aagatagtatagttttatcatatcatgtcttctt 38457694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 7038722 - 7038613
Alignment:
Q  63 tatgctatca-gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattg 161  Q
    |||||||||| |||||||||| | ||||||  |||||| | ||| ||||||  |||||| ||||||||| | ||||||||||| |||||  ||| ||||     
T  7038722 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaaagatgaatacgataggattagtaataggtttaatttatcatatcctatta 7038623  T
Q  162 gtgcaccaaa 171  Q
    ||| ||||||    
T  7038622 gtgtaccaaa 7038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 220
Target Start/End: Original strand, 48936324 - 48936451
Alignment:
Q  88 aaaaccaaggataaaaataacaaaatgtgaa-taggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaacacctgattgaatat 186  Q
    ||||| ||||||||||||||||||  | ||| ||||||||||||  ||| |||||||| |||||   || | ||||||||||||||| | |||||||       
T  48936324 aaaactaaggataaaaataacaaag-gagaagtaggataggattaaaaacaggtttaaattatct--tcctgttggtgcaccaaacaacggattgaaa-- 48936418  T
Q  187 tcaagatatgatagtgttatcatatcatgtcttc 220  Q
     || ||||||||||| |||||||||| |||||||    
T  48936419 -caggatatgatagtcttatcatatcctgtcttc 48936451  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 13109812 - 13109739
Alignment:
Q  77 ctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatc 150  Q
    |||||| ||||||||| ||||||||||||||||||  ||| |||||||| |||| |||||| ||| || |||||    
T  13109812 ctaacccaccaaaaactaaggataaaaataacaaagggtggataggatatgattagaaatatgttaaacttatc 13109739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 34731376 - 34731276
Alignment:
Q  73 gttgctaaccaaccaaaaaccaaggataaaaataacaaaatgtgaataggataggattcgaaataggtttaagttatccaatcttattggtgcaccaaac 172  Q
    |||||||||| | | ||||| |||||| |||||||||||   |  |||||||||||||   ||||||||||  ||||||  || ||||||||||||||||    
T  34731376 gttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggattaacaataggtttagtttatcctttcctattggtgcaccaaac 34731277  T
Q  173 a 173  Q
    |    
T  34731276 a 34731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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