View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20202_low_4 (Length: 490)

Name: NF20202_low_4
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20202_low_4
NF20202_low_4
[»] chr4 (25 HSPs)
chr4 (250-437)||(20976459-20976646)
chr4 (16-195)||(20978588-20978767)
chr4 (205-333)||(40932924-40933051)
chr4 (210-334)||(49738549-49738675)
chr4 (221-333)||(40018189-40018301)
chr4 (228-334)||(49686870-49686976)
chr4 (206-308)||(934456-934560)
chr4 (205-275)||(38903776-38903848)
chr4 (286-335)||(50471762-50471811)
chr4 (435-482)||(20976383-20976428)
chr4 (221-337)||(31403030-31403146)
chr4 (205-330)||(37042667-37042794)
chr4 (208-316)||(47147528-47147636)
chr4 (286-333)||(25427862-25427909)
chr4 (226-333)||(32339734-32339841)
chr4 (300-335)||(33773471-33773506)
chr4 (205-329)||(51841202-51841328)
chr4 (226-329)||(54470382-54470485)
chr4 (298-332)||(4136744-4136778)
chr4 (205-336)||(25755468-25755601)
chr4 (225-254)||(20977938-20977967)
chr4 (288-333)||(26356996-26357041)
chr4 (268-333)||(44719361-44719426)
chr4 (265-333)||(21528502-21528570)
chr4 (221-333)||(22420717-22420829)
[»] chr1 (19 HSPs)
chr1 (205-333)||(16822020-16822150)
chr1 (205-333)||(30396729-30396859)
chr1 (251-330)||(16943355-16943434)
chr1 (226-331)||(52073050-52073155)
chr1 (207-316)||(43934347-43934458)
chr1 (226-282)||(52482433-52482489)
chr1 (205-273)||(15577570-15577640)
chr1 (265-336)||(43028805-43028876)
chr1 (286-336)||(42337791-42337841)
chr1 (265-335)||(50257784-50257854)
chr1 (286-332)||(52292274-52292320)
chr1 (301-334)||(10584901-10584934)
chr1 (269-335)||(19412231-19412299)
chr1 (226-333)||(37591170-37591274)
chr1 (288-333)||(51440765-51440810)
chr1 (298-334)||(28533714-28533750)
chr1 (297-333)||(28694071-28694107)
chr1 (302-334)||(31434313-31434345)
chr1 (286-334)||(40568409-40568457)
[»] chr5 (8 HSPs)
chr5 (226-333)||(36123182-36123289)
chr5 (210-259)||(28005692-28005743)
chr5 (298-333)||(4653499-4653534)
chr5 (298-333)||(7678724-7678759)
chr5 (205-257)||(28186851-28186905)
chr5 (249-331)||(30639301-30639383)
chr5 (205-315)||(27998593-27998705)
chr5 (265-333)||(14667985-14668053)
[»] chr3 (11 HSPs)
chr3 (205-334)||(11284144-11284271)
chr3 (234-333)||(39535401-39535499)
chr3 (223-331)||(659697-659805)
chr3 (226-330)||(46367390-46367494)
chr3 (205-331)||(37598171-37598300)
chr3 (205-328)||(46431684-46431809)
chr3 (301-339)||(50891993-50892031)
chr3 (205-335)||(2340715-2340847)
chr3 (298-335)||(14415258-14415295)
chr3 (298-330)||(32170652-32170684)
chr3 (298-334)||(43396081-43396117)
[»] chr8 (10 HSPs)
chr8 (209-329)||(26055580-26055699)
chr8 (298-335)||(35914599-35914636)
chr8 (205-278)||(10108965-10109040)
chr8 (227-275)||(16715449-16715497)
chr8 (289-333)||(18125409-18125453)
chr8 (221-333)||(23492204-23492316)
chr8 (286-333)||(40813559-40813606)
chr8 (207-333)||(16994444-16994572)
chr8 (298-335)||(32838889-32838926)
chr8 (286-334)||(26363721-26363769)
[»] chr7 (6 HSPs)
chr7 (204-333)||(41483638-41483769)
chr7 (204-332)||(30914503-30914633)
chr7 (205-331)||(40830354-40830481)
chr7 (226-333)||(19262458-19262565)
chr7 (286-333)||(15682409-15682456)
chr7 (286-331)||(6428639-6428684)
[»] chr2 (8 HSPs)
chr2 (204-333)||(8197541-8197672)
chr2 (204-333)||(8202301-8202432)
chr2 (205-333)||(43832250-43832380)
chr2 (286-330)||(45077964-45078008)
chr2 (286-333)||(2610823-2610870)
chr2 (266-335)||(38452684-38452753)
chr2 (296-333)||(42549837-42549874)
chr2 (298-334)||(17429297-17429333)
[»] chr6 (3 HSPs)
chr6 (207-330)||(21870069-21870191)
chr6 (286-333)||(10098896-10098943)
chr6 (227-333)||(10422706-10422812)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 250 - 437
Target Start/End: Complemental strand, 20976646 - 20976459
Alignment:
Q  250 atatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtatttttgtacaaagac 349  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20976646 atatgatatatgactgaacattatggtggtgtttggtccatgtaatcaaccccacttagtgaaataaaacttggttgttgttgtatttttgtacaaagac 20976547  T
Q  350 atcatgaaaccattacttaatggaacttcatcttcaaggaaaatgttgtcatgacacattttttgagctacataacattcagcataaa 437  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20976546 atcatgaaaccattacttgatggaacttcatcttcaaggaaaatgttgtcatgacacattttttgagctacataacattcagcataaa 20976459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 20978767 - 20978588
Alignment:
Q  16 cagtatctatcaaaaatttgcgtgtgttcagcaatttatagctagacctgacctgtacaaaaacatctatgggatgaagatgatggagtaatcatcactt 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20978767 cagtatctatcaagaatttgcgtgtgttcagcaatttatagctagacctgacctgtacaaaaacatttatgggatgaagatgatggagtaatcaacactt 20978668  T
Q  116 taaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatgtgtagacactaaattaaagtttacctttgataa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20978667 taaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatgtgtagacactaaattaaagtttacctttgataa 20978588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 40933051 - 40932924
Alignment:
Q  205 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 304  Q
    |||| ||||||||||| | | |||||||||||||||| |||| |||||||||||||||  ||||||||||| |||||| | | ||||||  | |||||||    
T  40933051 aagaaaaactattaaggg-tctagagattaatgagttggatagggatatgatatatgatagaacattatggcggcgtttgatgcatgtagccgaccccac 40932953  T
Q  305 ttagtgagataaaacttggttgttgttgt 333  Q
    || ||| |||||  |||| ||||||||||    
T  40932952 ttggtgggataaggcttgattgttgttgt 40932924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 210 - 334
Target Start/End: Complemental strand, 49738675 - 49738549
Alignment:
Q  210 aaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccactta 307  Q
    ||||||||||||  ||| |||| ||||||||||| |||| || || |||||||||| ||||||||||| || ||| | ||||||||  | |||||| |||    
T  49738675 aaactattaagaaggatctagaaattaatgagttggatagggttaggatatatgacagaacattatggcggtgtttgatccatgtagccgaccccattta 49738576  T
Q  308 gtgagataaaacttggttgttgttgta 334  Q
    ||| |||||  ||||||||||||||||    
T  49738575 gtgggataaggcttggttgttgttgta 49738549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 40018301 - 40018189
Alignment:
Q  221 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 320  Q
    |||| ||||||| |||||||| |||| |||||||||||||||  |||||||| || | |||| | ||||||||  | |||||||||||||  ||||||||    
T  40018301 agatctagagatcaatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgtagccgaccccacttagtggaataaaact 40018202  T
Q  321 tggttgttgttgt 333  Q
    || ||| ||||||    
T  40018201 tgtttgctgttgt 40018189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 334
Target Start/End: Original strand, 49686870 - 49686976
Alignment:
Q  228 gagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgt 327  Q
    |||||||||||| | |||| |||||||||||||||  ||| ||||||| | |||| |  |||||||  | ||||||||||||| ||||| ||||||||||    
T  49686870 gagattaatgagctggatagggatatgatatatgatggaatattatggcgtcgtttgaaccatgtagccgaccccacttagtgggataagacttggttgt 49686969  T
Q  328 tgttgta 334  Q
    || ||||    
T  49686970 tgctgta 49686976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 934560 - 934456
Alignment:
Q  206 agagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccca 303  Q
    |||||||||||||||| | ||  ||||||||||||||| |||| || ||||||||||||  |||||||||||| |||||   ||||||||  | ||||||    
T  934560 agagaaactattaagaaagttctagagattaatgagttggatagggttatgatatatgatagaacattatggttgcgtttattccatgtagccgacccca 934461  T
Q  304 cttag 308  Q
    |||||    
T  934460 cttag 934456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 38903848 - 38903776
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 275  Q
    |||||||||||||||||  ||  || ||||||||||||||||||  |||||||||||||||  ||||||||||    
T  38903848 aagagaaactattaagaaagacctaaagattaatgagtttgatagagatatgatatatgacataacattatgg 38903776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 50471762 - 50471811
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtat 335  Q
    ||||||||||| ||||||||||||| |||||  |||||||||||||||||    
T  50471762 tccatgtaatcgaccccacttagtgggataacgcttggttgttgttgtat 50471811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 20976428 - 20976383
Alignment:
Q  435 aaataagacccctaaatacacagacgaaagaatcatttaaagtataat 482  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  20976428 aaataagacccctaaataca--gacgaaagaatcatttatagtataat 20976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 337
Target Start/End: Complemental strand, 31403146 - 31403030
Alignment:
Q  221 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 320  Q
    |||| ||||||||||| |||| ||||   || || |||||||  || ||||||||||  | | | ||||||||  | ||||||||||||  |||||||||    
T  31403146 agatctagagattaattagttggatagaaatgtggtatatgatagagcattatggtgttgcttgatccatgtagacgaccccacttagtaggataaaact 31403047  T
Q  321 tggttgttgttgtattt 337  Q
    |||||||||||||||||    
T  31403046 tggttgttgttgtattt 31403030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 37042794 - 37042667
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    |||||||||||||||||  ||| ||||||||| |||||| ||||   ||| | ||| |||  ||||||||||||| |||| | ||||||||  | ||||     
T  37042794 aagagaaactattaagaaagatctagagattattgagttggatagaaatacggtatttgatagaacattatggtgtcgtttgatccatgtagccgacccg 37042695  T
Q  303 acttagtgagataaaacttggttgttgt 330  Q
    |||||||| |||||  ||||||||||||    
T  37042694 acttagtgggataaggcttggttgttgt 37042667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 47147528 - 47147636
Alignment:
Q  208 agaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccact 305  Q
    ||||||||||||||  ||| |||||||||||||||| ||||  ||||||||||||||  |||||||||||    ||| | ||||||||| || ||||| |    
T  47147528 agaaactattaagaaagatctagagattaatgagttggata--gatatgatatatgatagaacattatggcattgtttgatccatgtaaccatccccaat 47147625  T
Q  306 tagtgagataa 316  Q
    ||||| |||||    
T  47147626 tagtgggataa 47147636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 25427909 - 25427862
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||| | |||||||||| |||||||| ||||||||||||||||    
T  25427909 tccatgtaaccgaccccacttaatgagataagacttggttgttgttgt 25427862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 32339734 - 32339841
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    |||||||||| ||||| ||||  ||||||||||||||  ||| ||||||| | |||| | |||||||| || |  | |||||||| |||||  |||||||    
T  32339734 tagagattaacgagttggatagagatatgatatatgatagaaaattatggcgtcgtttgatccatgtagtctattctacttagtgggataaggcttggtt 32339833  T
Q  326 gttgttgt 333  Q
    ||||||||    
T  32339834 gttgttgt 32339841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 33773471 - 33773506
Alignment:
Q  300 cccacttagtgagataaaacttggttgttgttgtat 335  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33773471 cccacctagtgagataaaacttggttgttgttgtat 33773506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 51841328 - 51841202
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    |||||||||||||||||  |||||||| ||| | ||||| |||| |||||||||||||||   |||||||||| || ||| | ||||| ||    |||||    
T  51841328 aagagaaactattaagaaggatttagaaattcaagagttggatagggatatgatatatgatacaacattatggcggtgtttgatccatatagctgacccc 51841229  T
Q  303 acttagtgagataaaacttggttgttg 329  Q
     ||||||| ||| || |||||||||||    
T  51841228 gcttagtgggatgaagcttggttgttg 51841202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 54470382 - 54470485
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    |||||||||||||||| ||||   ||||| ||||||||||| |||||| | | | || | ||||||||  ||||||||||||||| ||| |  |||||||    
T  54470382 tagagattaatgagttggatagaaatatggtatatgactgagcattattgcgtcatttgatccatgtagccaaccccacttagtgggattaggcttggtt 54470481  T
Q  326 gttg 329  Q
    ||||    
T  54470482 gttg 54470485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 332
Target Start/End: Complemental strand, 4136778 - 4136744
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttg 332  Q
    |||| ||||||||||||||||||||||||||||||    
T  4136778 accctacttagtgagataaaacttggttgttgttg 4136744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 336
Target Start/End: Original strand, 25755468 - 25755601
Alignment:
Q  205 aagagaaactattaag--agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    ||||||||||||||||  ||| || | |||||||||||| |||| ||||||||||||| |  ||||||||| ||| | || | |||||| | || | |||    
T  25755468 aagagaaactattaagtaagacttggggattaatgagttggatagggatatgatatatcatagaacattatagtgtcatttgatccatgaagtcgatccc 25755567  T
Q  303 acttagtgagataaaacttggttgttgttgtatt 336  Q
    | ||| || |||||  |||||||||| |||||||    
T  25755568 atttaatgggataaggcttggttgtttttgtatt 25755601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 254
Target Start/End: Complemental strand, 20977967 - 20977938
Alignment:
Q  225 ttagagattaatgagtttgatatggatatg 254  Q
    ||||||||||||||||||||||||||||||    
T  20977967 ttagagattaatgagtttgatatggatatg 20977938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 26356996 - 26357041
Alignment:
Q  288 catgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    |||||||||| |||||||||||| |||||  |||||||||||||||    
T  26356996 catgtaatcagccccacttagtgggataaggcttggttgttgttgt 26357041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 44719426 - 44719361
Alignment:
Q  268 cattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    |||||||||| |||| | ||||||||  | |||| |||||||| ||||| ||||||||||||||||    
T  44719426 cattatggtgtcgtttgatccatgtagccgaccctacttagtgggataagacttggttgttgttgt 44719361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 21528502 - 21528570
Alignment:
Q  265 gaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||| ||||||||| || | ||||||||  | ||||||||||||| |||||  |||||||||||||||    
T  21528502 gaacactatggtggcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 21528570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 22420829 - 22420717
Alignment:
Q  221 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 320  Q
    |||| |||||||||||||||| ||||  |||||| || ||||  || |||||||| |  ||| | || ||||| |  ||||||||||||| |||||  ||    
T  22420829 agatctagagattaatgagttggatagagatatggtaaatgatagagcattatggcgttgtttgatctatgtagttgaccccacttagtgggataaggct 22420730  T
Q  321 tggttgttgttgt 333  Q
    |||||||||||||    
T  22420729 tggttgttgttgt 22420717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 16822150 - 16822020
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    ||||||||||| |||||  ||| |||||||||||||| | ||||  |||||||||||||| |||||||||||| ||| || |||||||||| || |||||    
T  16822150 aagagaaactagtaagaaagatgtagagattaatgagctggatagcgatatgatatatgattgaacattatggcggc-tttggtccatgtagtcgacccc 16822052  T
Q  303 acttagtgagataaaactt-ggttgttgttgt 333  Q
    |||||||| |||||||||| ||||||||||||    
T  16822051 acttagtgggataaaacttgggttgttgttgt 16822020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 333
Target Start/End: Complemental strand, 30396859 - 30396729
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    |||||||||| ||||||  |||  ||||||||||||||| |||| ||||| |||||||||  |||||||||||||||||| | ||| ||||  |||||||    
T  30396859 aagagaaactgttaagaaggatccagagattaatgagttggatagggatacgatatatgatagaacattatggtggcgtttgatccgtgtagccaacccc 30396760  T
Q  303 acttagtgagataaaacttggttgttgttgt 333  Q
    |||||||| |||||  |||||||||| ||||    
T  30396759 acttagtgggataaggcttggttgtttttgt 30396729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 330
Target Start/End: Original strand, 16943355 - 16943434
Alignment:
Q  251 tatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgt 330  Q
    ||||||||||||  ||||||||||| |||||| | |||||||| || ||||||| |||||||||||  ||||||||||||    
T  16943355 tatgatatatgatagaacattatggcggcgtttgatccatgtagtcgaccccacctagtgagataatgcttggttgttgt 16943434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 52073155 - 52073050
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    |||||||||||||| | |||| || ||||||||||||  ||||||||||| |||| | | ||||||||  | ||||||||| ||| |||||  |||| ||    
T  52073155 tagagattaatgagctggatagggctatgatatatgatagaacattatggcggcgattgatccatgtagccgaccccacttggtgggataaggcttgatt 52073056  T
Q  326 gttgtt 331  Q
    ||||||    
T  52073055 gttgtt 52073050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 43934458 - 43934347
Alignment:
Q  207 gagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 304  Q
    |||||||||||||||  ||| || | |||||| |||| || | |||||||||| ||||  ||||||||||| |||||| | ||||||||   ||||||||    
T  43934458 gagaaactattaagaaggatctacaaattaattagttggaaagggatatgatagatgatagaacattatggcggcgtttgttccatgtagctaaccccac 43934359  T
Q  305 ttagtgagataa 316  Q
    |||||| |||||    
T  43934358 ttagtgggataa 43934347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 52482489 - 52482433
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 282  Q
    |||||||||||||||| || | |||||||||||||||  ||||||||||| ||||||    
T  52482489 tagagattaatgagttggacagggatatgatatatgatggaacattatggcggcgtt 52482433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 15577570 - 15577640
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattat 273  Q
    |||||||||||||||||  ||| |||||||||||||||| ||||  |||||||||| |||  |||||||||    
T  15577570 aagagaaactattaagaaggatatagagattaatgagttggatagagatatgatatttgatagaacattat 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 43028876 - 43028805
Alignment:
Q  265 gaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtatt 336  Q
    ||||| ||||||| |||| | | ||||||| | ||||||||||||| |||||  ||||||||||||||||||    
T  43028876 gaacactatggtgtcgtttgattcatgtaagcgaccccacttagtgggataaggcttggttgttgttgtatt 43028805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 42337791 - 42337841
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtatt 336  Q
    ||||||||  ||||||||||||||| |||||  ||||||||||||||||||    
T  42337791 tccatgtagccaaccccacttagtgggataaggcttggttgttgttgtatt 42337841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 50257784 - 50257854
Alignment:
Q  265 gaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtat 335  Q
    |||||||||||||   || | ||||||||  |||||||||||||||||||||  ||| |||||||||||||    
T  50257784 gaacattatggtgtaatttgatccatgtagccaaccccacttagtgagataaggcttcgttgttgttgtat 50257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 52292274 - 52292320
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttg 332  Q
    ||||||||| ||||||||||||||| |||||  ||||||||||||||    
T  52292274 tccatgtaaccaaccccacttagtgggataaggcttggttgttgttg 52292320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 10584934 - 10584901
Alignment:
Q  301 ccacttagtgagataaaacttggttgttgttgta 334  Q
    |||||||||| |||||||||||||||||||||||    
T  10584934 ccacttagtgggataaaacttggttgttgttgta 10584901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 19412231 - 19412299
Alignment:
Q  269 attatggtggcgttcggtccatgtaatcaaccccacttagtgaga--taaaacttggttgttgttgtat 335  Q
    ||||||||| |||| | ||||||||||||||  ||||||||||||  ||| ||||||||||| ||||||    
T  19412231 attatggtgtcgtttgatccatgtaatcaacttcacttagtgagatgtaagacttggttgttattgtat 19412299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 37591170 - 37591274
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    |||||||||||||||| ||||  |||||   ||| ||  |||||||||| || |||| | |||||||||  ||||||||||||||  ||| ||||| |||    
T  37591170 tagagattaatgagttggatagagatat---ataagatagaacattatgatgtcgtttgatccatgtaaataaccccacttagtggaatacaacttagtt 37591266  T
Q  326 gttgttgt 333  Q
    ||||||||    
T  37591267 gttgttgt 37591274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 51440810 - 51440765
Alignment:
Q  288 catgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||| | ||||||||||||| ||||| ||||||||||||||||    
T  51440810 catgtaaccgaccccacttagtgggataagacttggttgttgttgt 51440765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 28533714 - 28533750
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgta 334  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  28533714 accccacttagtgggataagacttggttgttgttgta 28533750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 28694071 - 28694107
Alignment:
Q  297 aaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  28694071 aaccctacttagtgggataaaacttggttgttgttgt 28694107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 334
Target Start/End: Complemental strand, 31434345 - 31434313
Alignment:
Q  302 cacttagtgagataaaacttggttgttgttgta 334  Q
    |||||||||||||||| ||||||||||||||||    
T  31434345 cacttagtgagataaagcttggttgttgttgta 31434313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 40568457 - 40568409
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgta 334  Q
    ||||||||  ||||||||||||||| |||||  ||||||||||||||||    
T  40568457 tccatgtagccaaccccacttagtgggataaggcttggttgttgttgta 40568409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 36123289 - 36123182
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    ||||||||||||||||   || || ||||||||||||  |||||||||||||||||| | |||||||||||   ||||||||||| ||||| ||||||||    
T  36123289 tagagattaatgagttatgtaggggtatgatatatgatagaacattatggtggcgtttgatccatgtaatcggtcccacttagtgggataagacttggtt 36123190  T
Q  326 gttgttgt 333  Q
    ||||||||    
T  36123189 gttgttgt 36123182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 28005692 - 28005743
Alignment:
Q  210 aaactattaaga--gatttagagattaatgagtttgatatggatatgatata 259  Q
    ||||||||||||  ||| ||||||||||||||||||||| ||||||||||||    
T  28005692 aaactattaagaaagatctagagattaatgagtttgatagggatatgatata 28005743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 4653499 - 4653534
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||||||||||||| ||||||||||||||||    
T  4653499 accccacttagtgagataagacttggttgttgttgt 4653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 7678724 - 7678759
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||||||| ||||||||||||||||||||||    
T  7678724 accccacttagtgggataaaacttggttgttgttgt 7678759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 28186905 - 28186851
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgata 257  Q
    |||||||||||||||||  |||||||||||||||||||| ||||  |||||||||    
T  28186905 aagagaaactattaagaaagatttagagattaatgagttggatagagatatgata 28186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 331
Target Start/End: Complemental strand, 30639383 - 30639301
Alignment:
Q  249 gatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgtt 331  Q
    |||||||| ||||||  |||||| |||   |||| | |||||||| ||||||| |||||||| ||||| ||||||||||||||    
T  30639383 gatatgatttatgacaaaacattgtggcatcgtttgatccatgtagtcaaccctacttagtgggataagacttggttgttgtt 30639301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 315
Target Start/End: Original strand, 27998593 - 27998705
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    ||||||||||| |||||  ||| || ||||||||||||| |||| | | |||||||||||  ||| ||||||  | |||| | ||||||||| | |||||    
T  27998593 aagagaaactactaagaaagatctacagattaatgagttagataggaacatgatatatgatagaatattatgacgtcgtttgatccatgtaaccgacccc 27998692  T
Q  303 acttagtgagata 315  Q
    |||||||| ||||    
T  27998693 acttagtgggata 27998705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 14667985 - 14668053
Alignment:
Q  265 gaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    |||||||||||||   || | ||||||||| | ||||||||||||| ||||| |||||||||| |||||    
T  14667985 gaacattatggtgtaatttgatccatgtaaccgaccccacttagtgggataagacttggttgtagttgt 14668053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 11284144 - 11284271
Alignment:
Q  205 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 304  Q
    |||||||||||||||||  | |||||||||||||||| |||||  ||||| ||||||| |||||||||| |   |||| | ||||||||  ||||||| |    
T  11284144 aagagaaactattaaga--tgtagagattaatgagttggatataaatatggtatatgattgaacattattgcatcgtttgatccatgtagccaaccccgc 11284241  T
Q  305 ttagtgagataaaacttggttgttgttgta 334  Q
    ||||||||||||  |||| |||||||||||    
T  11284242 ttagtgagataaggcttgcttgttgttgta 11284271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 39535499 - 39535401
Alignment:
Q  234 aatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||| | ||||||||| |   ||||||||||| |||||| | |||||||||||||    
T  39535499 aatgagttggataaggatatgatatatgatagaacattatggtggcgtttgatccatgtaa-ccggcccacttagtgggataaagcatggttgttgttgt 39535401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 331
Target Start/End: Original strand, 659697 - 659805
Alignment:
Q  223 atttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttg 322  Q
    ||||| ||||||||||||| |||| |||||| ||||||||  |||||||||||  | ||| | ||||||||  | ||||||||||||| | |||  ||||    
T  659697 atttacagattaatgagttggatagggatattatatatgatagaacattatggcagtgtttgatccatgtagccgaccccacttagtggggtaaggcttg 659796  T
Q  323 gttgttgtt 331  Q
    |||||||||    
T  659797 gttgttgtt 659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 330
Target Start/End: Complemental strand, 46367494 - 46367390
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    ||||||| |||||||| |||| |||||||||||||||  ||||||||||  | |||| | ||||||||  | |||||||||| |  |||||| |||||||    
T  46367494 tagagatgaatgagttggataaggatatgatatatgatagaacattatgacgtcgtttgatccatgtagcctaccccacttaattggataaagcttggtt 46367395  T
Q  326 gttgt 330  Q
    |||||    
T  46367394 gttgt 46367390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 37598300 - 37598171
Alignment:
Q  205 aagagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc- 301  Q
    ||||||||||||||||| || |  ||||||||||||||| |||| || ||||||||||||  ||||||||||| | | || |   |||||| |||||||     
T  37598300 aagagaaactattaagatatatctagagattaatgagttggataggggtatgatatatgatagaacattatggcgtcatttgactcatgtagtcaaccct 37598201  T
Q  302 cacttagtgagataaaacttggttgttgtt 331  Q
    || |||||| |||||| |||| ||||||||    
T  37598200 catttagtgggataaagcttgattgttgtt 37598171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 46431809 - 46431684
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    ||||||||||||||| |  ||| |||||||||||||||| ||||  ||||| ||||||||  |||||||  || | |||| | |||||||   |||||||    
T  46431809 aagagaaactattaaaaaagatctagagattaatgagttggatagagatattatatatgatggaacattgaggcgtcgtttgatccatgtcgccaacccc 46431710  T
Q  303 acttagtgagataaaacttggttgtt 328  Q
    |||||||| |||||  ||||||||||    
T  46431709 acttagtgggataaggcttggttgtt 46431684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 339
Target Start/End: Original strand, 50891993 - 50892031
Alignment:
Q  301 ccacttagtgagataaaacttggttgttgttgtattttt 339  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  50891993 ccacttagtgggataagacttggttgttgttgtattttt 50892031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 335
Target Start/End: Complemental strand, 2340847 - 2340715
Alignment:
Q  205 aagagaaactattaag--agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    ||||||||||||||||  |||| |||||||||||||||  || | ||  |||||||||||  ||||||||||| |  ||| | |||||| |  |||||||    
T  2340847 aagagaaactattaagaaagatctagagattaatgagtcggagagggtaatgatatatgatagaacattatggcgttgtttgatccatgaagccaacccc 2340748  T
Q  303 acttagtgagataaaacttggttgttgttgtat 335  Q
    |||||||   ||||   ||||||||||||||||    
T  2340747 acttagttgtataaggattggttgttgttgtat 2340715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 14415295 - 14415258
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgtat 335  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  14415295 accccacttagtgggataagacttggttgttgttgtat 14415258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 32170652 - 32170684
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgt 330  Q
    |||||||||||||||||||| ||||||||||||    
T  32170652 accccacttagtgagataaagcttggttgttgt 32170684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 43396117 - 43396081
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgta 334  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  43396117 accccacttagtgggataaagcttggttgttgttgta 43396081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 26055580 - 26055699
Alignment:
Q  209 gaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttag 308  Q
    |||| ||||||| ||| |||||||||||||| | |||| || |||||||||||| ||||||||||| ||||||| | ||||||||  | | |||||||||    
T  26055580 gaaattattaag-gatctagagattaatgagatggataggggtatgatatatgattgaacattatgatggcgtttgatccatgtagccgatcccacttag 26055678  T
Q  309 tgagataaaacttggttgttg 329  Q
    || |||||  |||||||||||    
T  26055679 tgggataaggcttggttgttg 26055699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 35914636 - 35914599
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgtat 335  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35914636 accccacttagtgagataagacttggttgttgttgtat 35914599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 10108965 - 10109040
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtgg 278  Q
    ||||||||||| |||||  ||| |||||||||| ||||||||||  |||||| |||||||  ||||||||||||||    
T  10108965 aagagaaactaataagaaagatctagagattaacgagtttgatagagatatgttatatgatagaacattatggtgg 10109040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 16715449 - 16715497
Alignment:
Q  227 agagattaatgagtttgatatggatatgatatatgactgaacattatgg 275  Q
    ||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  16715449 agagattaatgggtttgatagggatatgatatatgatagaacattatgg 16715497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 18125409 - 18125453
Alignment:
Q  289 atgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||| ||||||| |||||||| ||||||||||||||||||||||    
T  18125409 atgtagtcaacccgacttagtgggataaaacttggttgttgttgt 18125453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 23492204 - 23492316
Alignment:
Q  221 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaact 320  Q
    |||| ||| |||||||||||| ||||   |||||||||||||  ||||| ||||||| | ||   ||||||||  | |||||||||||||||||||  ||    
T  23492204 agatgtagcgattaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccgaccccacttagtgagataaggct 23492303  T
Q  321 tggttgttgttgt 333  Q
    || ||||||||||    
T  23492304 tgtttgttgttgt 23492316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 40813559 - 40813606
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||  ||||||||||||||| |||||||||| |||||||||||    
T  40813559 tccatgtagccaaccccacttagtgggataaaacttcgttgttgttgt 40813606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 16994572 - 16994444
Alignment:
Q  207 gagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccac 304  Q
    |||||||||||||||  ||||||||||||| |||||| |||   |||||||| ||| |  |||| ||||| ||  ||| ||| ||||||  | | |||||    
T  16994572 gagaaactattaagaatgatttagagattattgagttggattgagatatgatgtataatagaacgttatgatgttgtttggtacatgtagccgaacccac 16994473  T
Q  305 ttagtgagataaaacttggttgttgttgt 333  Q
    ||||| ||||||| ||||||||| |||||    
T  16994472 ttagtcagataaagcttggttgtcgttgt 16994444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 32838926 - 32838889
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgtat 335  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  32838926 accccacttagtgggataagacttggttgttgttgtat 32838889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 26363721 - 26363769
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgta 334  Q
    |||||||| || |||||||| |||| ||||| |||||||||||||||||    
T  26363721 tccatgtagtcgaccccactcagtgggataagacttggttgttgttgta 26363769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 333
Target Start/End: Original strand, 41483638 - 41483769
Alignment:
Q  204 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 301  Q
    ||||||||||||||||||  ||| |||| ||||| ||||| ||||| |||||||||||||   |||| |||||||| | |  | ||||||||  | ||||    
T  41483638 gaagagaaactattaagaaagatctagaaattaacgagttggatatagatatgatatatggtagaactttatggtgtcatatgatccatgtagccgaccc 41483737  T
Q  302 cacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||| ||||| | ||||||||||||||    
T  41483738 cacttagtgggataagatttggttgttgttgt 41483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 332
Target Start/End: Complemental strand, 30914633 - 30914503
Alignment:
Q  204 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 301  Q
    ||||||||||||| | ||  ||| |||||||||||||||| |||| |||||||||||||||  |||| ||||||  ||||| | ||||| |   ||||||    
T  30914633 gaagagaaactatcatgaaggatctagagattaatgagttggatagggatatgatatatgatagaactttatggcagcgtttgatccatattgccaaccc 30914534  T
Q  302 cacttagtgagataaaacttggttgttgttg 332  Q
    ||||||||| |||||  ||||||| ||||||    
T  30914533 cacttagtgggataaggcttggttattgttg 30914503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 40830354 - 40830481
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    |||||||||||||||||  ||| |||| |||||||||||  ||||| |||||||||||||  |||||||| || |||||| | ||||||||  |||||||    
T  40830354 aagagaaactattaagaaggatctagaaattaatgagttgtatatg-atatgatatatgatagaacattacggaggcgtttgatccatgtagccaacccc 40830452  T
Q  303 acttagtgagataaaacttggttgttgtt 331  Q
     | ||||| |||||  |||| ||||||||    
T  40830453 tcctagtgggataaggcttgattgttgtt 40830481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 333
Target Start/End: Complemental strand, 19262565 - 19262458
Alignment:
Q  226 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggtt 325  Q
    |||||||||||||||| |||| |||||||||||||||  ||||||||||| || ||| | | ||||||| | || |||||| ||| ||||   ||| |||    
T  19262565 tagagattaatgagttggatagggatatgatatatgatagaacattatggcggtgtttgattcatgtaaccgacgccacttggtgggatatggcttagtt 19262466  T
Q  326 gttgttgt 333  Q
    ||||||||    
T  19262465 gttgttgt 19262458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 15682409 - 15682456
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||  |||||||||||||||||||||| |||||| ||||||||    
T  15682409 tccatgtagccaaccccacttagtgagataaagcttggtagttgttgt 15682456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 6428684 - 6428639
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgtt 331  Q
    ||||||| | ||||||||| ||||| ||||||||||||||||||||    
T  6428684 tccatgtgaccaaccccacgtagtgggataaaacttggttgttgtt 6428639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 8197672 - 8197541
Alignment:
Q  204 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 301  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||  | ||||    
T  8197672 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccc 8197573  T
Q  302 cacttagtgagataaaacttggttgttgttgt 333  Q
     |||||||| |||||  |||||||||||||||    
T  8197572 tacttagtgggataatgcttggttgttgttgt 8197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 8202432 - 8202301
Alignment:
Q  204 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccc 301  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||  | ||||    
T  8202432 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccc 8202333  T
Q  302 cacttagtgagataaaacttggttgttgttgt 333  Q
     |||||||| |||||  |||||||||||||||    
T  8202332 tacttagtgggataatgcttggttgttgttgt 8202301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 205 - 333
Target Start/End: Original strand, 43832250 - 43832380
Alignment:
Q  205 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaacccc 302  Q
    |||||||||||||||||  ||| |||||||||||||||| |||| ||||||||| ||| |  ||||||||||  ||| || | ||||||||    ||||     
T  43832250 aagagaaactattaagaaggatctagagattaatgagttggataaggatatgatgtattatagaacattatgacggcatttgatccatgtagctgaccca 43832349  T
Q  303 acttagtgagataaaacttggttgttgttgt 333  Q
    |||||||  |||||  |||||||||||||||    
T  43832350 acttagtttgataaggcttggttgttgttgt 43832380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 45077964 - 45078008
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgt 330  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||    
T  45077964 tccatgtaaccgaccccacttagtgagataaagcttggttgttgt 45078008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 2610823 - 2610870
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||| | |||||||||||||||||||  |||||||||||||||    
T  2610823 tccatgtaaccgaccccacttagtgagataaggcttggttgttgttgt 2610870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 38452753 - 38452684
Alignment:
Q  266 aacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttgttgttgtat 335  Q
    |||| ||||||| | |||| ||||||||  | ||||||||||||| |||||  |||||||||||||||||    
T  38452753 aacactatggtgtcattcgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtat 38452684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 42549874 - 42549837
Alignment:
Q  296 caaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  42549874 caaccccacttagtgggataaagcttggttgttgttgt 42549837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 17429297 - 17429333
Alignment:
Q  298 accccacttagtgagataaaacttggttgttgttgta 334  Q
    |||||||||||||||||||  ||||||||||||||||    
T  17429297 accccacttagtgagataaggcttggttgttgttgta 17429333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 21870191 - 21870069
Alignment:
Q  207 gagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccactt 306  Q
    |||||||||||||| ||| ||||||||||||||||  ||| ||||||||||||| | |||| |||||||| ||||| | |||||| |  | ||| |||||    
T  21870191 gagaaactattaag-gatctagagattaatgagttatatagggatatgatatatcattgaatattatggttgcgtttgatccatgcagccgacctcactt 21870093  T
Q  307 agtgagataaaacttggttgttgt 330  Q
    |||| |||||   |||||||||||    
T  21870092 agtgggataaggtttggttgttgt 21870069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 333
Target Start/End: Complemental strand, 10098943 - 10098896
Alignment:
Q  286 tccatgtaatcaaccccacttagtgagataaaacttggttgttgttgt 333  Q
    ||||||||||| ||||||||||||| ||||| ||||| ||||||||||    
T  10098943 tccatgtaatcgaccccacttagtgggataagacttgattgttgttgt 10098896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 10422812 - 10422706
Alignment:
Q  227 agagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatcaaccccacttagtgagataaaacttggttg 326  Q
    |||||||| || ||| ||||  ||||| ||||||||| ||||||| ||||| ||||   |  |||||| |||||  |||||||| ||||| |||||||||    
T  10422812 agagattattgggttggatagagatattatatatgacagaacattgtggtgtcgtttaattgatgtaaccaaccttacttagtgggataagacttggttg 10422713  T
Q  327 ttgttgt 333  Q
    |||||||    
T  10422712 ttgttgt 10422706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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