View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20202_low_6 (Length: 433)
Name: NF20202_low_6
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 4133243 - 4133660
Alignment:
| Q |
16 |
gttacaatacctgaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatatagatgtggattggggcagctgccaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4133243 |
gttacaatacctgaaaggtcccggtcaaggcattccttttccatctttctaatctctcaaagttaccgcctatgtagacgtggattggggcagctgccaa |
4133342 |
T |
|
| Q |
116 |
gtttctaaaaaatacacaaccgattatggcatatttcttggtgactccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133343 |
gtttctaaaaaatacacaaccgattatggcatatttcttggtgactccttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcag |
4133442 |
T |
|
| Q |
216 |
aggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgatgttattgttgatttaagtatggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4133443 |
aggctgaatacattgccatttctgccttcacatctgagttattgtggcggcatagacaattattcagagcttttgttgttattgttgatttaagtatggt |
4133542 |
T |
|
| Q |
316 |
taccaaaaatcgagttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaagtaatgtagctacctac |
415 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133543 |
tactaaaaattgagttattttttatacagggccatttctaattttattaccaaataaaataaagatgagggaatgaggagcaagtaatgtagctacctac |
4133642 |
T |
|
| Q |
416 |
ctggatggtaacttcatc |
433 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4133643 |
ctggatggtaacttcatc |
4133660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 41080556 - 41080419
Alignment:
| Q |
165 |
tgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtggcg |
264 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||||| ||| | |||||||||||||||| |||||| ||||| |||||||||||||||||| | |
|
|
| T |
41080556 |
tgatagcttggaaatccaagaagcaagctcctgatgctctctcctccgcagaggctgaatacagggccattgctgccctcacatctgagttattgt---g |
41080460 |
T |
|
| Q |
265 |
gcatagacaattattcagagcttttgatgttattgttgatt |
305 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
41080459 |
acatagacaattactcacagctttagatgttattgttgatt |
41080419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 41091908 - 41091808
Alignment:
| Q |
163 |
cttgatagattggaaattgaagaagcaagctattgttgctcgctctttagcagaggctgaatacattgccatttctgccttcacatctgagttattgtgg |
262 |
Q |
| |
|
|||||||| ||||||| ||||||| || |||||||||||||||||| |||||||||||||| | |||||| ||||| |||||||||||||| ||||| |
|
|
| T |
41091908 |
cttgatagcttggaaaccgaagaagtaaactattgttgctcgctcttctgcagaggctgaatagagggccattgctgccctcacatctgagttactgtgg |
41091809 |
T |
|
| Q |
263 |
c |
263 |
Q |
| |
|
| |
|
|
| T |
41091808 |
c |
41091808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 41091958 - 41091905
Alignment:
| Q |
102 |
ggggcagctgccaagtttctaaaaaatacacaaccgattatggcatatttcttg |
155 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||| |||| |||||||||||| |
|
|
| T |
41091958 |
ggggaagctgccaagtttcttaaaaattcacaaccacttattgcatatttcttg |
41091905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University