View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20202_low_9 (Length: 346)
Name: NF20202_low_9
Description: NF20202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20202_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2333898 - 2333704
Alignment:
| Q |
1 |
tcgattattttcccaatcaatatggattatattccaattccactacttcttgtttcttcaattaaattccacttccagtttttcgatccgttgatttaat |
100 |
Q |
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| T |
2333898 |
tcgattattttcccaatcaatatcgattatattccaattccactacttcttgtttcttcaattaaattccaattccagtttttcgatccgttgatttaat |
2333799 |
T |
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| Q |
101 |
tatatccaatcgatgtcaattatcttcctaatcaatagcagtttcaacgttatcacatggaggaaactgcttcttgtttcaaatcgatatcaatt |
195 |
Q |
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| T |
2333798 |
tatatccaatcgatgtcaattatctccctaatcaatagcagtttcaacgttatcacatggaggaaactgcttcttgtttcaaatggatatcaatt |
2333704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 168 - 329
Target Start/End: Complemental strand, 2333669 - 2333508
Alignment:
| Q |
168 |
tgcttcttgtttcaaatcgatatcaattctattactttcacgctttcaccacaattttatttttccgttaaatcacatggaggattcaattccactaaaa |
267 |
Q |
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| T |
2333669 |
tgcttcttgtttcaaatcgatatcaattctattactttcaagctttcaccacaattttatttttccgttaaatcacatggaggattcaattccactaaaa |
2333570 |
T |
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| Q |
268 |
acatttgacccttcttcttgtaattcgtttggttcgtaatttctacatatacaagaattgtt |
329 |
Q |
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| T |
2333569 |
acatttgacccttcttcttgtaattcgtttggttcgtaatttctacatatacaagaattgtt |
2333508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 29200552 - 29200485
Alignment:
| Q |
4 |
attattttcccaatcaatatggattatattccaattccactacttcttgtttcttcaattaaattcca |
71 |
Q |
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| T |
29200552 |
attattttcccaataaatatcaattatattccaattcatctgcttcttgttttttcaattatattcca |
29200485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 29200426 - 29200392
Alignment:
| Q |
137 |
agcagtttcaacgttatcacatggaggaaactgct |
171 |
Q |
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| T |
29200426 |
agcagtttcaacgttatctcatggaggaaactgct |
29200392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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