View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20203_high_1 (Length: 955)

Name: NF20203_high_1
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20203_high_1
NF20203_high_1
[»] chr3 (5 HSPs)
chr3 (16-946)||(7037862-7038794)
chr3 (692-870)||(39795240-39795418)
chr3 (701-870)||(32490848-32491017)
chr3 (728-803)||(831794-831869)
chr3 (765-870)||(20524861-20524966)
[»] chr4 (8 HSPs)
chr4 (739-886)||(36625521-36625668)
chr4 (726-869)||(33451293-33451436)
chr4 (696-870)||(19181414-19181588)
chr4 (763-870)||(44126011-44126118)
chr4 (696-874)||(45413767-45413945)
chr4 (756-872)||(26635260-26635376)
chr4 (765-872)||(2183304-2183411)
chr4 (696-814)||(42964503-42964621)
[»] chr2 (4 HSPs)
chr2 (700-930)||(6452408-6452637)
chr2 (701-863)||(40054471-40054633)
chr2 (691-858)||(6457533-6457700)
chr2 (765-859)||(7670386-7670480)
[»] chr7 (3 HSPs)
chr7 (727-868)||(39594606-39594747)
chr7 (701-872)||(41482419-41482590)
chr7 (784-874)||(24429718-24429808)
[»] chr8 (6 HSPs)
chr8 (691-798)||(12595848-12595955)
chr8 (701-870)||(22573080-22573249)
chr8 (701-874)||(31734261-31734434)
chr8 (784-870)||(556807-556895)
chr8 (786-870)||(9028635-9028719)
chr8 (728-795)||(3346410-3346477)
[»] chr5 (4 HSPs)
chr5 (702-870)||(34731215-34731383)
chr5 (702-803)||(16290786-16290887)
chr5 (728-802)||(7010701-7010775)
chr5 (522-558)||(9187494-9187530)
[»] chr1 (10 HSPs)
chr1 (727-874)||(9383224-9383371)
chr1 (696-874)||(26793697-26793875)
chr1 (776-870)||(4076347-4076441)
chr1 (776-869)||(19806758-19806851)
chr1 (701-830)||(12855276-12855405)
chr1 (691-732)||(44107845-44107886)
chr1 (765-813)||(20018619-20018667)
chr1 (734-822)||(28883928-28884016)
chr1 (784-874)||(6768290-6768380)
chr1 (729-826)||(30209719-30209816)
[»] chr6 (3 HSPs)
chr6 (702-799)||(12771941-12772038)
chr6 (776-870)||(8547436-8547530)
chr6 (776-870)||(8573789-8573883)


Alignment Details
Target: chr3 (Bit Score: 868; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 868; E-Value: 0
Query Start/End: Original strand, 16 - 946
Target Start/End: Original strand, 7037862 - 7038794
Alignment:
Q  16 gaaagaacaattcacccctttaactatccgaccatttgcatgaaatttggtcataactctcatgaaatcagttttgacatcttcccaaaattctttcaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037862 gaaagaacaattcacccctttaactatccgaccatttgcatgaaatttggtcataactctcatgaaatcagttttgacatcttcccaaaattctttcaca 7037961  T
Q  116 agccaaaattcacaccatccgggcttggacttttagaactatcgcactgccaaattaccttgcgaaattttgcttatgaaaattcccgcactaactccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7037962 agccaaaattcacaccatccgggcttggacttttagaactatcgcactgccaaattaccttgcgaaattttgcttatgaaaattcccgcactaactccat 7038061  T
Q  216 catgtcttcactattaattctttttaagtttatgttagtcgggataagtctgttacccctggctgagaagtgtcactgaaaatgatcaacgatggctttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038062 catgtcttcactattaattctttttaagtttatgttagtcgggataagtctgttacccctggctgagaagtgtcactgaaaatgatcaacgatggctttc 7038161  T
Q  316 tttatgtcgtccgcttcattcaaccttctgccattccactccaaagtaagaatttcatgttcttttcttctcttatttatacacccatgaaagtacttag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038162 tttatgtcgtccgcttcattcaaccttctgccattccactccaaagtaagaatttcatgttcttttcttctcttatttatacacccatgaaagtacttag 7038261  T
Q  416 tgtttgcatccccatatccttcagccatctagctctcaatttttgccactggatattgcagtttagattcgtaagcttaaataattgagaag--nnnnnn 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  7038262 tgtttgcatccccatatccttcagccatctagctctcaatttttgccactggatattgcagtttagattcgtaagcttaaataattgagaagattttttt 7038361  T
Q  514 nnnnnnnngaagaagctaaattagtccactcaaattaacatcggagagatgagaagatctctcttgatcaaaacctccgcatctgagagccccaatgata 613  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038362 ttttttttgaagaagctaaattagtccactcaaattaacatcggagagatgagaagatctctcttgatcaaaacctccgcatctgagagccccaatgata 7038461  T
Q  614 cgccttttattttcagtctattcaaatcttccttaacttctttaactttgcctcctgtattgttttgacatatgtcattaaaggtctgtttgatgcgcat 713  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038462 cgccttttattttcggtctattcaaatcttccttaacttctttaactttgcctcctgtattgttttgacatatgtcattaaaggtctgtttgatgcgcat 7038561  T
Q  714 gatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctat 813  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7038562 gatagagagacctgatatgataaaattatcttatcctatttaaatccattatttggtacactaataggatatgataaattaaacctattactaatcctat 7038661  T
Q  814 cgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcataggcttatcatcagcatgcatgttattttctttaccctcc 913  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038662 cgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcataggcttatcatcagcatgcatgttattttctttaccctcc 7038761  T
Q  914 ttcgatttccaatccagactcttccttcatctc 946  Q
    |||||||||||||||||||||||||||||||||    
T  7038762 ttcgatttccaatccagactcttccttcatctc 7038794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 692 - 870
Target Start/End: Complemental strand, 39795418 - 39795240
Alignment:
Q  692 taaaggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaa 791  Q
    ||||||| |||||| |||||| ||||||||||| ||||||||||| | |||| ||||||  ||||||   || |||||| ||| ||||| ||||||||||    
T  39795418 taaaggtttgtttggtgcgcaggatagagagacatgatatgataacactatcatatcctacttaaatatgttgtttggtgcaccaatagaatatgataaa 39795319  T
Q  792 ttaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||| | ||||| |||| |||| ||||||||   ||||||||  ||||||| |||||   ||||||||||||||||||    
T  39795318 ttaaatcgattactaatcatatcttattcatcccatgtaattcgcatccttagtttttaacgggttagcaacatgatag 39795240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 701 - 870
Target Start/End: Original strand, 32490848 - 32491017
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    ||||| |||||| |||| ||||||  |||||||||| | |||| ||| || ||||||||| || |||||| ||| |||| || | |||||   |||||||    
T  32490848 gtttggtgcgcaggataaagagacaggatatgataacactatcatattctatttaaatcctttgtttggtgcaccaatatgaaaggataatcgaaaccta 32490947  T
Q  801 ttaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    || | ||| ||||| |||  ||| ||||| ||| ||||||||| |||| | |||||||||||| ||||||    
T  32490948 ttgctaattctatcctatcaatcctttgttattttaatccttagttttagctgggttagcaacctgatag 32491017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 728 - 803
Target Start/End: Original strand, 831794 - 831869
Alignment:
Q  728 atatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctatta 803  Q
    ||||||||||||||||||||| ||||||||| |||| |||| | ||| || || | |||||||| |||||||||||    
T  831794 atatgataaaattatcttatcatgtttaaattcattgtttgatgcaccaagagaaaatgataaactaaacctatta 831869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 870
Target Start/End: Original strand, 20524861 - 20524966
Alignment:
Q  765 tttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaaca 864  Q
    |||||| ||| |||| |||| ||||||||||||| ||||  |||| |||| |||  ||| ||||||||| ||||||||  |||||| ||||||| ||||     
T  20524861 tttggtgcaccaatatgatacgataaattaaacccattagtaatcatatcctatctatcctttgtaattttaatccttgatttttggtgggttaacaact 20524960  T
Q  865 tgatag 870  Q
    ||||||    
T  20524961 tgatag 20524966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 6e-49; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 739 - 886
Target Start/End: Complemental strand, 36625668 - 36625521
Alignment:
Q  739 ttatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaat 838  Q
    ||||| |||||| |||||||   || |||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||||||    
T  36625668 ttatcatatcctatttaaatttgttgtttggtgcactaataggatatgataaattaaacctattacgaatcctatcctattcaccctttgtaattctaat 36625569  T
Q  839 ccttactttttgttgggttagcaacatgatagcataggcttatcatca 886  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36625568 ccttactttttgttgggttagcaacatgatagcatagacttatcatca 36625521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 726 - 869
Target Start/End: Original strand, 33451293 - 33451436
Alignment:
Q  726 tgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatctt 825  Q
    ||||||||||||| |||| ||||||  |||||| | || |||||| ||| |||| ||||||||||| |||||||||||| | | ||||| |||||||| |    
T  33451293 tgatatgataaaactatcgtatcctacttaaattcgttgtttggtgcaccaatatgatatgataaaataaacctattactacttctatcctattcatcct 33451392  T
Q  826 ttgtaattctaatccttactttttgttgggttagcaacatgata 869  Q
    |||||||| ||||||||| |||||| ||||||| ||||||||||    
T  33451393 ttgtaattataatccttagtttttgatgggttaacaacatgata 33451436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 696 - 870
Target Start/End: Complemental strand, 19181588 - 19181414
Alignment:
Q  696 ggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaa 795  Q
    |||| ||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |  |||| ||| |||||| ||| || | |||||||||||||||    
T  19181588 ggtccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaa 19181489  T
Q  796 acctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||||| | ||||||||| || ||||| ||| | ||| |  |||||| |||||| ||| ||||||||| |||||    
T  19181488 acctatttctaatcctatcctactcatcctttattatttttgtccttagtttttggtggattagcaacaagatag 19181414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 763 - 870
Target Start/End: Original strand, 44126011 - 44126118
Alignment:
Q  763 tatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaa 862  Q
    |||||||| ||  ||||||| |||||||||||||| |||| | ||||||||| |||||| |||||||  ||||||| |||  |||||| |||||||||||    
T  44126011 tatttggtgcagcaataggaaatgataaattaaacttatttctaatcctatcctattcaccttttgtttttctaattctttgtttttgatgggttagcaa 44126110  T
Q  863 catgatag 870  Q
    | ||||||    
T  44126111 cttgatag 44126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 696 - 874
Target Start/End: Complemental strand, 45413945 - 45413767
Alignment:
Q  696 ggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaa 795  Q
    |||| ||||| ||| | |||||| |||||  |||| |||| || |||| |||| || || ||||  || |||||| ||| ||||||| | ||||||||||    
T  45413945 ggtccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaattaa 45413846  T
Q  796 acctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    ||||||| || |||||||| |||  | | ||||| ||| | ||||||| |||||| |||||||||||| ||||||||||    
T  45413845 acctatttcctatcctatcctatctaacctttgttatttttatccttagtttttggtgggttagcaacctgatagcata 45413767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 756 - 872
Target Start/End: Complemental strand, 26635376 - 26635260
Alignment:
Q  756 aatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttggg 855  Q
    ||||| || |||||| ||| || | ||||||||||||| |||||||| ||||| ||||| || || || ||| | ||||| ||||||| |||||| ||||    
T  26635376 aatccgttttttggtgcaccaacatgatatgataaatttaacctatttccaattctatcctactcctcctttattattcttatccttagtttttggtggg 26635277  T
Q  856 ttagcaacatgatagca 872  Q
    |||||||| ||||||||    
T  26635276 ttagcaacctgatagca 26635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 765 - 872
Target Start/End: Original strand, 2183304 - 2183411
Alignment:
Q  765 tttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaaca 864  Q
    |||||| ||| ||||| | | ||||||||||||  ||| ||||||||||| ||| || | ||||| ||| | ||||||| |||||| ||||||||||||     
T  2183304 tttggtgcaccaatagaaaaggataaattaaactcatttccaatcctatcctatccaacctttgttatttttatccttaatttttggtgggttagcaacc 2183403  T
Q  865 tgatagca 872  Q
    ||||||||    
T  2183404 tgatagca 2183411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 696 - 814
Target Start/End: Complemental strand, 42964621 - 42964503
Alignment:
Q  696 ggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaa 795  Q
    |||||||||| |||||| ||||   ||||  |||||||||||| |||| ||||||| | ||||||  |||||| | ||| ||||||| | ||||| ||||    
T  42964621 ggtctgtttggtgcgcaggataagcagacaggatatgataaaactatcctatcctgctgaaatccggtatttgttgcaccaataggaaaggataatttaa 42964522  T
Q  796 acctattaccaatcctatc 814  Q
    ||| |||||  ||||||||    
T  42964521 acccattacttatcctatc 42964503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 700 - 930
Target Start/End: Original strand, 6452408 - 6452637
Alignment:
Q  700 tgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacct 799  Q
    |||||| |||||||||||| |||||  ||||||||||||||||| |||||  |||||||||||  |||| | ||| |||| |||||||||||||||||||    
T  6452408 tgtttggtgcgcatgatag-gagacaggatatgataaaattatcctatccaatttaaatccatggtttgatgcaccaataagatatgataaattaaacct 6452506  T
Q  800 attaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcataggcttatcatcag-catgcatgtta 898  Q
    ||||| |||| |||| ||||||   ||||||||||||||||||| ||||||||||||||| ||| | |||||||| ||||| || ||| |  |  | |||    
T  6452507 attactaatcttatcctattcacgctttgtaattctaatccttagtttttgttgggttagaaaccttatagcatatgcttaccaccagacgcgattatta 6452606  T
Q  899 ttttctttaccctccttcgatttccaatccag 930  Q
    ||||||||| |||||||||||| |||||||||    
T  6452607 ttttcttta-cctccttcgattcccaatccag 6452637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 701 - 863
Target Start/End: Complemental strand, 40054633 - 40054471
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    |||||||||||||||||  ||||| ||||||||||| | |||  |||||| ||||||||  || |||||| ||| ||||| | |||||||| ||||||||    
T  40054633 gtttgatgcgcatgataacgagacatgatatgataacactattatatcctatttaaatctcttgtttggtgcaccaatagaaaatgataaactaaaccta 40054534  T
Q  801 ttaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaac 863  Q
    ||   ||||||||| |||  ||| ||||| ||| ||||||||| |||| | ||||||||||||    
T  40054533 ttgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttagcaac 40054471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 691 - 858
Target Start/End: Original strand, 6457533 - 6457700
Alignment:
Q  691 ttaaaggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataa 790  Q
    |||| ||| |||||| ||| ||||||||||||||  ||||||||| || |||| |||| || || ||||  || |||||| ||| ||||| | |||||||    
T  6457533 ttaagggtatgtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataa 6457632  T
Q  791 attaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggtta 858  Q
    |||||| | ||| |||||| |||| ||| || | ||||| ||| | ||||||| |||||| |||||||    
T  6457633 attaaatcaatttccaatcatatcttatccaccctttgttatttttatccttaatttttggtgggtta 6457700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 765 - 859
Target Start/End: Original strand, 7670386 - 7670480
Alignment:
Q  765 tttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttag 859  Q
    |||||| ||| ||||| | ||||||| || ||||| || | ||||||||| |||| | ||||||||||||| ||||||| |||||| ||||||||    
T  7670386 tttggtgcaccaatagaaaatgataagtttaacctgtttctaatcctatcctattgagcttttgtaattcttatccttaatttttggtgggttag 7670480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 727 - 868
Target Start/End: Original strand, 39594606 - 39594747
Alignment:
Q  727 gatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttt 826  Q
    |||||||||||| |||| ||||||  |||||||| || |||||| ||| |||| |||||| ||||||||||||||||| |||| |||| |||||||| ||    
T  39594606 gatatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaataagatatgctaaattaaacctattactaatcttatcatattcatcctt 39594705  T
Q  827 tgtaattctaatccttactttttgttgggttagcaacatgat 868  Q
    ||||||| | ||||||| |||||| |||||||||||||||||    
T  39594706 tgtaatttttatccttagtttttgatgggttagcaacatgat 39594747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 701 - 872
Target Start/End: Complemental strand, 41482590 - 41482419
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    ||||| ||| ||||||||  |||| ||||| ||||||| |||| | ||||| || ||| |  | |||||| ||| || |||| | ||||| |||||||||    
T  41482590 gtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaaccta 41482491  T
Q  801 ttaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagca 872  Q
    ||   |||| |||| || ||| | ||||| ||| | ||||||| |||||| |||||||||||| ||||||||    
T  41482490 tttttaatcatatcctactcaccctttgttatttttatccttagtttttggtgggttagcaacctgatagca 41482419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 784 - 874
Target Start/End: Original strand, 24429718 - 24429808
Alignment:
Q  784 atgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    ||||||| ||||| |||||   ||||||||| || ||| | ||||| ||| | ||||||| |||||| |||||||||||| ||||||||||    
T  24429718 atgataatttaaaactatttataatcctatcttactcaccctttgttatttttatccttagtttttggtgggttagcaacctgatagcata 24429808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 691 - 798
Target Start/End: Complemental strand, 12595955 - 12595848
Alignment:
Q  691 ttaaaggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataa 790  Q
    ||||||||| ||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||||||  || |||||| || ||||| ||||||||||    
T  12595955 ttaaaggtccgtttggtgcgcaagatagagagacatgatatgataaaattatcctatcctgtttaaatcttttgtttggtgcagtaatatgatatgataa 12595856  T
Q  791 attaaacc 798  Q
    | ||||||    
T  12595855 actaaacc 12595848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 701 - 870
Target Start/End: Original strand, 22573080 - 22573249
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    ||||| |||||||||||  ||||| ||||||||| | | |||| |||||||  | ||||| || |||||| ||| || |||| ||||||| || |||||     
T  22573080 gtttggtgcgcatgataaggagacatgatatgattagaatatcctatcctgactcaatccgttgtttggtgcaccaacaggaaatgataagtttaacctg 22573179  T
Q  801 ttaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    || | ||||||||| |||| | | ||||||||||| ||||||| |||||| ||||||| |||||||||||    
T  22573180 tttctaatcctatcctattgaacctttgtaattcttatccttagtttttggtgggttaacaacatgatag 22573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 701 - 874
Target Start/End: Original strand, 31734261 - 31734434
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    ||||| ||| |||||||||||||| ||||||||||  | | || ||||||| || ||||| || |||||| ||| |||| || |||||||||||||||||    
T  31734261 gtttggtgcacatgatagagagacatgatatgataggactttcctatcctgctttaatccgttgtttggtgcaccaataagaaatgataaattaaaccta 31734360  T
Q  801 ttaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    || |||||| ||||  || || | ||||| ||| | ||||||| |||||| ||| ||| |||||||||| ||||    
T  31734361 tttccaatcttatcccatccaccctttgttatttttatccttagtttttggtggattaacaacatgataacata 31734434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 784 - 870
Target Start/End: Original strand, 556807 - 556895
Alignment:
Q  784 atgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatcctt--actttttgttgggttagcaacatgatag 870  Q
    ||||||||||||||||||| | |||| |||| |||||| | |||||  |||||||||||    |||||| |||||||||||||||||||    
T  556807 atgataaattaaacctatttctaatcatatcctattcaccctttgtttttctaatcctttgtttttttggtgggttagcaacatgatag 556895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 786 - 870
Target Start/End: Complemental strand, 9028719 - 9028635
Alignment:
Q  786 gataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||| |||||||||||   ||||||||| |||| | | ||||||||||| ||||||  |||||| |||||||||||| ||||||    
T  9028719 gataatttaaacctatttttaatcctatcctattgaacctttgtaattcttatccttggtttttgatgggttagcaacctgatag 9028635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 795
Target Start/End: Original strand, 3346410 - 3346477
Alignment:
Q  728 atatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaa 795  Q
    |||||||||||||||| ||||||  |||||| |||| |||||| ||||||||| | | ||||||||||    
T  3346410 atatgataaaattatcctatcctaattaaattcattgtttggtgcactaatagaaaaagataaattaa 3346477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 702 - 870
Target Start/End: Original strand, 34731215 - 34731383
Alignment:
Q  702 tttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctat 801  Q
    |||| ||||||||||| |||||   |||||||||| | |||| |||||| ||||||||| || |||||| ||| ||||||| | |||||| |||||||||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaactaaacctat 34731314  T
Q  802 taccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    |   ||||||||| |||  ||| ||||| ||| ||||||||| |||| | |||||||||||| ||||||    
T  34731315 tgttaatcctatcctatcaatcctttgttattttaatccttagttttagctgggttagcaacctgatag 34731383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 702 - 803
Target Start/End: Complemental strand, 16290887 - 16290786
Alignment:
Q  702 tttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctat 801  Q
    |||| |||||| |||| ||||||  |||||||||||||||||||||||||||||||||| || |||||| | |  |||||| | |||||| ||||| |||    
T  16290887 tttggtgcgcaggataaagagacaggatatgataaaattatcttatcctgtttaaatcctttgtttggtgctcccataggaaaggataaaataaacatat 16290788  T
Q  802 ta 803  Q
    ||    
T  16290787 ta 16290786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 728 - 802
Target Start/End: Complemental strand, 7010775 - 7010701
Alignment:
Q  728 atatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctatt 802  Q
    |||||||||||||||| ||||||  |||||||  ||||||||| |||||||| ||||||||||| ||| ||||||    
T  7010775 atatgataaaattatcatatcctacttaaatctcttatttggtgcactaataagatatgataaaataatcctatt 7010701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 522 - 558
Target Start/End: Complemental strand, 9187530 - 9187494
Alignment:
Q  522 gaagaagctaaattagtccactcaaattaacatcgga 558  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9187530 gaagaagctaaattagtccactcaaattgacatcgga 9187494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 727 - 874
Target Start/End: Complemental strand, 9383371 - 9383224
Alignment:
Q  727 gatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttt 826  Q
    |||||||||||| ||||  |||||| ||||||||||| |||||| ||| |||||||   ||||||||||||| ||| | |||| |||| || ||| | ||    
T  9383371 gatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttatcctactcaccctt 9383272  T
Q  827 tgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    ||| ||| | ||||||| |||||| |||||||||||| ||||||||||    
T  9383271 tgttattttcatccttaatttttgatgggttagcaacctgatagcata 9383224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 696 - 874
Target Start/End: Original strand, 26793697 - 26793875
Alignment:
Q  696 ggtctgtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaa 795  Q
    |||||||||| ||| |||||||   |||| |||||||||| || |||| ||||||| || ||||| || |||||| ||| ||||| | | ||||| ||||    
T  26793697 ggtctgtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataacttaa 26793796  T
Q  796 acctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    || |||| | ||||||||| || ||| | ||||| ||| | || |||| |||||| |||||||||||| ||||||||||    
T  26793797 acttatttctaatcctatcctaatcaacctttgttatttttattcttagtttttggtgggttagcaacctgatagcata 26793875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 776 - 870
Target Start/End: Complemental strand, 4076441 - 4076347
Alignment:
Q  776 aataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||||| | ||||||||||||||||||| ||||||||| ||||||   |||||  |||||||||||| |||||| ||| |||| ||| ||||||    
T  4076441 aataggaaaggataaattaaacctattactaatcctatcctattcactctttgtttttctaatccttagtttttggtggattaggaacctgatag 4076347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 776 - 869
Target Start/End: Complemental strand, 19806851 - 19806758
Alignment:
Q  776 aataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgata 869  Q
    ||||||| | ||||||||||||||||| | ||||||||| ||||||   |||||  |||||||||||| |||||| ||||||| |||| |||||    
T  19806851 aataggaaaggataaattaaacctatttctaatcctatcctattcactctttgtttttctaatccttagtttttggtgggttaacaacctgata 19806758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 830
Target Start/End: Complemental strand, 12855405 - 12855276
Alignment:
Q  701 gtttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaaccta 800  Q
    ||||| ||| |||||||  |||||  |||||||||  |||||| |||||| |||||||||||| |||| | ||| ||||||| | |||| |  |||||||    
T  12855405 gtttggtgcacatgataaggagacaggatatgatatcattatcatatcctatttaaatccattgtttgatgcaccaataggaaaggatacaccaaaccta 12855306  T
Q  801 ttaccaatcctatcgtattcatcttttgta 830  Q
    ||||  ||| |||| |||||||| ||||||    
T  12855305 ttacttatcatatcctattcatcctttgta 12855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 732
Target Start/End: Original strand, 44107845 - 44107886
Alignment:
Q  691 ttaaaggtctgtttgatgcgcatgatagagagacctgatatg 732  Q
    ||||||||||||||||||| |||||||||||||| |||||||    
T  44107845 ttaaaggtctgtttgatgcacatgatagagagacatgatatg 44107886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 765 - 813
Target Start/End: Original strand, 20018619 - 20018667
Alignment:
Q  765 tttggtacactaataggatatgataaattaaacctattaccaatcctat 813  Q
    |||||||||| || | |||||||||||||||||||||||| ||||||||    
T  20018619 tttggtacaccaacatgatatgataaattaaacctattactaatcctat 20018667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 822
Target Start/End: Complemental strand, 28884016 - 28883928
Alignment:
Q  734 taaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcat 822  Q
    ||||||||||||||| || || |||||| | |||||| ||| ||||| ||| |||||||||||| | || | ||||||||| |||||||    
T  28884016 taaaattatcttatcttgattcaatccactgtttggtgcaccaatagtataggataaattaaactttttcctaatcctatcttattcat 28883928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 784 - 874
Target Start/End: Original strand, 6768290 - 6768380
Alignment:
Q  784 atgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatagcata 874  Q
    |||||||||||||| |||| || |||||||  ||| || | ||||| ||| | ||||||| |||||| |||||||| ||| ||||||||||    
T  6768290 atgataaattaaacttatttcctatcctattctatccaacctttgttatttttatccttaatttttggtgggttaggaacctgatagcata 6768380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 826
Target Start/End: Original strand, 30209719 - 30209816
Alignment:
Q  729 tatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacctattaccaatcctatcgtattcatcttt 826  Q
    ||||||||||||||| ||||||  |||||||  || |||||||||| ||||| | |||||||| ||| |  |||||  |||||||| |||||| ||||    
T  30209719 tatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaaataatctcattacttatcctatcctattcaccttt 30209816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 702 - 799
Target Start/End: Complemental strand, 12772038 - 12771941
Alignment:
Q  702 tttgatgcgcatgatagagagacctgatatgataaaattatcttatcctgtttaaatccattatttggtacactaataggatatgataaattaaacct 799  Q
    |||| |||||||||||||||||| |||||||||||   ||||||||| | ||||||||| || |||||| ||  |||| ||||||| |||| ||||||    
T  12772038 tttggtgcgcatgatagagagacatgatatgataactctatcttatcgtatttaaatcctttgtttggtgcagcaatatgatatgagaaatcaaacct 12771941  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 870
Target Start/End: Complemental strand, 8547530 - 8547436
Alignment:
Q  776 aataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||||| | ||||| ||||||||||| | |||| |||| |||||| | ||||| ||| | || |||| |||||| |||||||||||||||||||    
T  8547530 aataggaaaggataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaacatgatag 8547436  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 870
Target Start/End: Complemental strand, 8573883 - 8573789
Alignment:
Q  776 aataggatatgataaattaaacctattaccaatcctatcgtattcatcttttgtaattctaatccttactttttgttgggttagcaacatgatag 870  Q
    ||||||| ||||||| ||||||||||| | |||| |||| |||||| | ||||| ||| | || |||| |||||| ||||||||||||| |||||    
T  8573883 aataggaaatgataacttaaacctatttctaatcttatcatattcaccctttgttatttttatacttagtttttggtgggttagcaacaagatag 8573789  T

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