View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20203_high_3 (Length: 438)
Name: NF20203_high_3
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 51363318 - 51363546
Alignment:
| Q |
13 |
aaaatttcgcgcgtaataaaactataaactgcttcttc----caaagtattaatctgctaatattatattacagttatctaactaaccattccattcaaa |
108 |
Q |
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| T |
51363318 |
aaaatttcgcgcgtaataaaactataaaatgcttcttccttccaaagtattaatctgctaatattatattacagttatctaactaaccattccattcaaa |
51363417 |
T |
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| Q |
109 |
tttcaatgcctaggatttacctctgctcatgttaaagtgtatttcatgg--nnnnnnngttgttgataaatctgttaccctttctatgaatgctcaagga |
206 |
Q |
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| T |
51363418 |
tttcaatgcctaggatttacctctgctcatgttaaagtgtatttcatggtttttttttgttgttgataaatctgttaccctttctatgaatgctcaagga |
51363517 |
T |
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| Q |
207 |
gtgccttgatacaaagacagttgggcgct |
235 |
Q |
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| T |
51363518 |
gtgccttgatacaaagacagttgggcgct |
51363546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 51363555 - 51363695
Alignment:
| Q |
281 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttataatcatctaacaaattactatattcaatctgcta-atcttgggtttacctttg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | | |||||||||||||||||| |
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| T |
51363555 |
aatcaaatgctttcaaattctctctcatattaatctgctaatcttacaatcatctaacaaattactatattcaaatttcaacatcttgggtttacctttg |
51363654 |
T |
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| Q |
380 |
tttctgtcaaaaccttcttcatggttttcttatgcccacaa |
420 |
Q |
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| T |
51363655 |
tttctgtcaaaaccttcttcatggttttcttatgcccacaa |
51363695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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