View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20203_high_6 (Length: 379)
Name: NF20203_high_6
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 29 - 364
Target Start/End: Original strand, 54843792 - 54844122
Alignment:
| Q |
29 |
gggtccaagattagatgatagggcatacttcacggggaagaattcgcataatggtcagagtagtcatgtccagcacaactcgagttcctgcagtcagctt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54843792 |
gggtccaagattagatgatagggcatacttcacggggaagaattcgcataatggtcagagtagtcatgtccagcacaactcgagttcctgcagtcagctt |
54843891 |
T |
|
| Q |
129 |
ctctttgtccaccttactacgacagccaactacatatcttggcccgctgcttgctttaacgaccactaaaaagattcaaataatacacattgcttagatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54843892 |
ctctttgtccaccttactacgacagccaactacatatcttggcccgctgcttgctttaacgaccactaaaaagattcaaataatacacattgcttagatt |
54843991 |
T |
|
| Q |
229 |
atcatctttagccaatccaccagtttatgactaagagagggacagccttagcaatagagcttnnnnnnnnnnnnnnnntattgcataaataaaggttctg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54843992 |
atcatctttagccaatccaccagtttatgactaagagagggacagccttagcaatagagcttaaaaaaaaaaac-----attgcataaataaaggttctg |
54844086 |
T |
|
| Q |
329 |
cttgtctgagcaagtgaaaattgggagtgtgaaaat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
54844087 |
cttgtctgagcaagtgaaaattgggagtgtgaaaat |
54844122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University