View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20203_high_8 (Length: 250)

Name: NF20203_high_8

Description: NF20203

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20203_high_8

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 239; E-Value: 1e-132

Query Start/End: Original strand, 8 - 250

Target Start/End: Original strand, 54843464 - 54843706

Alignment:

Q	8	agagaagaacaccctgtgagaagtaaattcagtttcttttccttaatgaaacactagaaataagtcatacaaatgtgtttgagatatccttaccttcggt	107	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54843464	agagaagaacaccctgtgagaagtaaattcagtttcttttcattaatgaaacactagaaataagtcatacaaatgtgtttgagatatccttaccttcggt	54843563	T

Q	108	ggtttgattccaaccctaagaaaaagttcaggattcattaaaggcagttcaattgattccctgagttctcgaatctgatctgaaagccctccaactgcag	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54843564	ggtttgattccaaccctaagaaaaagttcaggattcattaaaggcagttcaattgattccctgagttctcgaatctgatctgaaagccctccaactgcag	54843663	T

Q	208	agtaactaacgtttccagggtcctcatgtagcatattgtatac	250	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	54843664	agtaactaacgtttccagggtcctcatgtagcatattgtatac	54843706	T

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Target: chr3; HSP #2

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 97 - 169

Target Start/End: Original strand, 52565927 - 52565999

Alignment:

Q	97	ttaccttcggtggtttgattccaaccctaagaaaaagttcaggattcattaaaggcagttcaattgattccct	169	Q
		\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	52565927	ttaccttgggaggtttaattccaactctaagaaagagctcaggattcattagaggtaattcaattgattccct	52565999	T

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