View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20203_low_13 (Length: 204)
Name: NF20203_low_13
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 15494151 - 15494254
Alignment:
| Q |
86 |
aactagaccttgcatccgtgctgctgcagagatcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgt |
185 |
Q |
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|||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494151 |
aactagaccttgcacccgtgctgccgcacgggtcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgt |
15494250 |
T |
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| Q |
186 |
aact |
189 |
Q |
| |
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|||| |
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| T |
15494251 |
aact |
15494254 |
T |
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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 23143186 - 23143289
Alignment:
| Q |
86 |
aactagaccttgcatccgtgctgctgcagagatcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgt |
185 |
Q |
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|||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23143186 |
aactagaccttgcacccgtgctgccgcacgggtcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgt |
23143285 |
T |
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| Q |
186 |
aact |
189 |
Q |
| |
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|||| |
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| T |
23143286 |
aact |
23143289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 31379427 - 31379325
Alignment:
| Q |
87 |
actagaccttgcatccgtgctgctgcagagatcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgta |
186 |
Q |
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||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379427 |
actagaccttgcacccgtgctgccgcacgggtcataattgttgcaaactattattgagatagtatataaaataatgttctcactctgcagctacgatgta |
31379328 |
T |
|
| Q |
187 |
act |
189 |
Q |
| |
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||| |
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|
| T |
31379327 |
act |
31379325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 43151495 - 43151419
Alignment:
| Q |
11 |
ataattctagacagtttaagcttttctttgagaagattctaaaattagggcaaaagaatagtgagtatatagaagaa |
87 |
Q |
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||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
43151495 |
ataattccagacagtttaagcttttctttgagaagatcctgaaattagggcaaaagaatagtgagtatatagaagaa |
43151419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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