View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20203_low_2 (Length: 465)

Name: NF20203_low_2
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20203_low_2
NF20203_low_2
[»] chr4 (7 HSPs)
chr4 (47-449)||(3670578-3670982)
chr4 (241-272)||(49211849-49211880)
chr4 (235-269)||(55157627-55157661)
chr4 (240-269)||(3673427-3673456)
chr4 (241-269)||(8179912-8179940)
chr4 (241-269)||(24972272-24972300)
chr4 (241-269)||(48007294-48007322)
[»] chr8 (3 HSPs)
chr8 (57-157)||(9891822-9891921)
chr8 (184-242)||(9891982-9892040)
chr8 (241-269)||(8051935-8051963)
[»] chr7 (4 HSPs)
chr7 (241-272)||(4125478-4125509)
chr7 (241-272)||(24507866-24507897)
chr7 (241-269)||(4125745-4125773)
chr7 (241-269)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (241-272)||(7725536-7725567)
chr5 (241-269)||(8383971-8383999)
chr5 (241-269)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (241-271)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (241-269)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (241-269)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (241-269)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (241-269)||(10544172-10544200)
chr1 (241-269)||(17414743-17414771)
chr1 (241-269)||(17415358-17415386)
chr1 (241-269)||(18459589-18459617)
chr1 (241-269)||(18459751-18459779)
chr1 (241-269)||(33024673-33024701)
chr1 (241-269)||(49915876-49915904)
chr1 (241-269)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 47 - 449
Target Start/End: Complemental strand, 3670982 - 3670578
Alignment:
Q  47 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattct 146  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaagatgggcattct 3670883  T
Q  147 cgtgcctgtctttgttttctcttttt--aataaaatacattttgttatttaaatgaaaaatattattacacgaaagttaattagaaaataaacaaattat 244  Q
    ||||||||| ||| |||| | |||||  ||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||| |||||||    
T  3670882 cgtgcctgttttttttttttttttttttaataaaatacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattat 3670783  T
Q  245 acaatgaatattttatattctaatagttaaattagtagatgtctataacaatttcttagactagaattcctataatatacacaaaagcatgcatgataag 344  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3670782 gcaatggatattttatattctaatagttaaattagtagatgtctataacaacttcttagactagaattcctataatatacacaaaagcatgcatgataag 3670683  T
Q  345 tggaaaatagatcctctagagtcatcaaatcggtgtaacaagatctcgaccgttggattgagttgcacctcaaatccaatggttcaaaattttatgcacc 444  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3670682 tggaaaatagatcctctagagtcatcaaatcggtgtagcaagatctcgaccgttggattgagttgcacctcaaatccaatggttcgaaattttatgcacc 3670583  T
Q  445 gactg 449  Q
     ||||    
T  3670582 aactg 3670578  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  241 ttatacaatgaatattttatattctaatagtt 272  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 55157661 - 55157627
Alignment:
Q  235 aacaaattatacaatgaatattttatattctaata 269  Q
    ||||| |||||||||||||||||||||||||||||    
T  55157661 aacaatttatacaatgaatattttatattctaata 55157627  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 269
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  240 attatacaatgaatattttatattctaata 269  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 9891822 - 9891921
Alignment:
Q  57 tgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattctcgtgcctgtc 156  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9891822 tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttattggtaactagtgtgtaagatggccattctcgtgcctgtc 9891920  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  184 ttttgttatttaaatgaaaaatattattacacgaaagttaattagaaaataaacaaatt 242  Q
    |||||||||||||||||||| || |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  241 ttatacaatgaatattttatattctaatagtt 272  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  241 ttatacaatgaatattttatattctaatagtt 272  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 272
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  241 ttatacaatgaatattttatattctaatagtt 272  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  241 ttatacaatgaatattttatattctaatagt 271  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 269
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  241 ttatacaatgaatattttatattctaata 269  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

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