View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20203_low_4 (Length: 402)
Name: NF20203_low_4
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 23445923 - 23445554
Alignment:
| Q |
1 |
aagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaagatttcagatactaccatgaacatgacaaatctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23445923 |
aagcaatcgaagtaaagtagcttcaacaataaagacattttatgaattcaaagttgtgcaacaaagatttcagatactaccatgaacatgacaaatctaa |
23445824 |
T |
|
| Q |
101 |
ttttatcacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatctaact |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23445823 |
ttttattacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaactgtaataaaatctaact |
23445724 |
T |
|
| Q |
201 |
aaacttaacaaatttgccattattcagcagaaaatttgtgttctgagtgctctagtgttggcaatttgatacaccaatctacgatccatccactacaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23445723 |
aaacttaacaaatttgccattattcagcagaaaa----------------tctagtgttggcaatttgatacaccaatccacgatccatccactacaatg |
23445640 |
T |
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| Q |
301 |
atatcaacaaataaaattattctcatgcataaagtacataaaccattacaactgttatactataactggcaagagggtaagaactg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
23445639 |
atatcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactggcaagagggtaagaactg |
23445554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23446953 - 23446881
Alignment:
| Q |
1 |
aagcaatcgaagtaaagtagcttcaacaataaagacattttattaattcaaagttgtgcaacaaagatttcaga |
74 |
Q |
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|||||||||||||| ||||| |||||||||||||||| ||||| |||||||| |||||||||||||||| |||| |
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| T |
23446953 |
aagcaatcgaagtagagtag-ttcaacaataaagacaatttatgaattcaaatttgtgcaacaaagattacaga |
23446881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 212
Target Start/End: Original strand, 24298697 - 24298805
Alignment:
| Q |
103 |
ttatcacaatagcttactagcacatataggaccacatattacaagagagcgacaaacttattgacaacagacttaacaaattgtaataaaatctaactaa |
202 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| |||||||||| ||| |||| ||||| |||| | | ||||||||| || | ||||||||| | |
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| T |
24298697 |
ttatcacaatagctcactagcacataaaggaccacatgttacaagagaaggactaactaattgataacaaagtcaacaaattg-aacataatctaactga |
24298795 |
T |
|
| Q |
203 |
acttaacaaa |
212 |
Q |
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||| |||||| |
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| T |
24298796 |
actcaacaaa |
24298805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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