View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20203_low_7 (Length: 286)
Name: NF20203_low_7
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 41761978 - 41761734
Alignment:
| Q |
12 |
tattctaaattataataataaagacaaacttttgattcatttaattacgttgtttcaaaaacactcataaaatatttattgagtttatc--nnnnnnnaa |
109 |
Q |
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| T |
41761978 |
tattctaaattataataataaagacaaacttttgattcatttaattacgttgtttcaaaaacactcttaaaatatttattgagtttatcttttttttaaa |
41761879 |
T |
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| Q |
110 |
aatttggttttacttattttcataaaatttatacaaattgatctcctttttcattatctccataaccaatgaaaattgttgacgtaaaatttaattcaag |
209 |
Q |
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| T |
41761878 |
aatttggttttacttattttcataaaatttatacaaattgatctcctttttcat--------taaccaatgaaaattgttgacgtaaaatttaattcaag |
41761787 |
T |
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| Q |
210 |
gagaaaacaaaaatcagactccaatatt----aaagaaatgggcatgaagttt |
258 |
Q |
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| T |
41761786 |
gagaaaacaaaaatcagactccaatattaaagaaagaaatgggcatgaagttt |
41761734 |
T |
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