View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20203_low_8 (Length: 282)

Name: NF20203_low_8
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20203_low_8
NF20203_low_8
[»] chr4 (2 HSPs)
chr4 (13-255)||(52712030-52712272)
chr4 (13-238)||(52717627-52717852)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 52712030 - 52712272
Alignment:
Q  13 agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712030 agagaaagagactttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 52712129  T
Q  113 agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 212  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712130 agatgccaccagcaagtgtgatgacaaaactcatcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 52712229  T
Q  213 ttggtctcttatatcatttgggtattaaaatcttctatctttt 255  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  52712230 ttggtctcttatatcatttgggtataaaaatcttctatctttt 52712272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 52717627 - 52717852
Alignment:
Q  13 agagaaagagagtttgaaattgaggaagaaacaaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaac 112  Q
    |||||||| ||  ||||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| | ||    
T  52717627 agagaaagggatgttgaaattgaggaagcagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacac 52717726  T
Q  113 agatgccaccagcaagtgtgatgacaaaactcatcctcgtcatggtcgggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgt 212  Q
    ||||||||||||||||||| ||||||| ||| |||||| |||||||  ||||||||||||||||||||||||| || ||| |||||||||| ||||||||    
T  52717727 agatgccaccagcaagtgtcatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgt 52717826  T
Q  213 ttggtctcttatatcatttgggtatt 238  Q
    |||||||||| |||||||| ||||||    
T  52717827 ttggtctcttgtatcatttaggtatt 52717852  T

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