View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20203_low_9 (Length: 258)
Name: NF20203_low_9
Description: NF20203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20203_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 52712050 - 52711803
Alignment:
| Q |
1 |
aatttcaaactctctttctctgcgactatcactcatgttctctatcaaacctgcatttcaaatttcctatacttgtgttacaaaattattcaacaaaaca |
100 |
Q |
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| T |
52712050 |
aatttcaaagtctctttctcttcgactatcactcatgttctccatcaaacctgcatttcaaatttcctatacttgtgttacaaaattattcaacaaaaca |
52711951 |
T |
|
| Q |
101 |
tattaggtcc-actaccatttccaccaccaatgctatctttcttttttgtgccaacacttgtagaacaaaaaagcattggatttggaagaggttaagaac |
199 |
Q |
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| T |
52711950 |
tattaggtcccactaccatttccaccaccaatgctatctttcttttttgtgcccacacttgtagaacaaaaaagcattggatttggaagagggtaagaac |
52711851 |
T |
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| Q |
200 |
caccattattattaaacaactcaccaccgatactccgccctctcctat |
247 |
Q |
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| T |
52711850 |
caccattattattaaacaactcaccaccgatactccgccctctcctat |
52711803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 52717260 - 52717123
Alignment:
| Q |
101 |
tattaggtccactaccatttccaccaccaatgctatctttcttttttgtgccaacacttgtagaacaaaaaagcattggatttggaagaggttaagaacc |
200 |
Q |
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||||||||||| ||||| ||||||| || |||||||||||||| ||||||||| |||||||||||| | ||||||| ||||||||| |||| |||||||| |
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| T |
52717260 |
tattaggtccattaccacttccaccgcccatgctatctttcttctttgtgccagcacttgtagaaccagaaagcataggatttggaggagggtaagaacc |
52717161 |
T |
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| Q |
201 |
accattattattaaacaactcaccaccgatactccgccctc |
241 |
Q |
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| T |
52717160 |
accat---tattgaacaactcaccactcatactcctccctc |
52717123 |
T |
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