View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20204_high_12 (Length: 383)
Name: NF20204_high_12
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 45458628 - 45458757
Alignment:
| Q |
74 |
gtcaagtaactaatggttgacctgacacgccttgagagggaagaagtgtggatttcgatgtttgaacaccgacccttgcatgttattgttcttgcaacta |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45458628 |
gtcaagtagctaatggttgacctgacacgccttgagaggggagaagtgtggatttcgatgtttgaacaccgacccttgcatgtcattgttcttgcaacta |
45458727 |
T |
|
| Q |
174 |
acaattgaattgtaattacatgactcttgc |
203 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |
|
|
| T |
45458728 |
acaattgagttgaaattacatgactcttgc |
45458757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 249 - 369
Target Start/End: Original strand, 45458803 - 45458921
Alignment:
| Q |
249 |
gaacttaagagcgtggttaaacattaaagtgaaatatagacatcccaaccctgttgacattcctaataaacatgctctactatacccactcataaaatga |
348 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45458803 |
gaacttaagagtgtggttaaacattaaagtgaaacgtagacatcccaaccctgttgacactcctaataaacatgctctac--tacccactcataaaatga |
45458900 |
T |
|
| Q |
349 |
taaaatagcaatgatatttgt |
369 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
45458901 |
taaaatagcaatgatatttgt |
45458921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University