View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_high_20 (Length: 296)
Name: NF20204_high_20
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_20 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 286
Target Start/End: Complemental strand, 34906195 - 34905946
Alignment:
| Q |
40 |
ttttcgttaccaccaccaccaagttccagttaccataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctc |
136 |
Q |
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||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
34906195 |
ttttcgtcaccaccaccaccaagttccggtcaccataactttttcgtccggcctcctttaaaatcccctccatcaccattgaattcctctcttcttcctc |
34906096 |
T |
|
| Q |
137 |
tacaaaagccctcaatttatttttagattggagaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaa |
236 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
34906095 |
tacaaaagccatcaatttttttttagattggagaagtttaattttcgagatctcccccttctctcttgtttttcggccaccgtgagttgccattgagaaa |
34905996 |
T |
|
| Q |
237 |
accaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatg |
286 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34905995 |
accaaacccaacatattcttcctcatgatgtcagcaacaaaacccctatg |
34905946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 23482968 - 23482728
Alignment:
| Q |
48 |
accaccaccaccaagttccagttaccataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaag |
144 |
Q |
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|||||||||||||| ||||||| |||||||||||| | || ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |
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| T |
23482968 |
accaccaccaccaacttccagtcaccataacttttccgtctggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaag |
23482869 |
T |
|
| Q |
145 |
ccctcaatttatttttagattggagaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacc |
244 |
Q |
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| T |
23482868 |
ccctcaatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggccaccgtgagttgccattggaaaaaccaaacc |
23482770 |
T |
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| Q |
245 |
caccatattcttcctcatgatgtcagcaacaaaacccctatg |
286 |
Q |
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| T |
23482769 |
caccatattcttcctcatgatgtcagcaacaaaacccctatg |
23482728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 23473470 - 23473237
Alignment:
| Q |
50 |
caccaccaccaagttccagttaccataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctctacaaaagcc |
146 |
Q |
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|||||||||||| ||| || ||||||||| || | ||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||||| |
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| T |
23473470 |
caccaccaccaacctccggtcaccataactattccgtccggcctcctttaaaatccctgccaccaccgttgaattcctctcttcttcctctacaaaagcc |
23473371 |
T |
|
| Q |
147 |
ctcaatttatttttagattggagaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaaccca |
246 |
Q |
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|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
23473370 |
ctcaatttatttttagattggagaagtttaatttttgagacttcccccttctctcttgttttccggccactgtgagttgccattgggaaaatcaaaccca |
23473271 |
T |
|
| Q |
247 |
ccatattcttcctcatgatgtcagcaacaaaacc |
280 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23473270 |
tcatattcttcctcatgatgtcagcaacaaaacc |
23473237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 11235940 - 11236189
Alignment:
| Q |
40 |
ttttcgttaccaccaccaccaagttccagttaccataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctcttc---ctc |
136 |
Q |
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||||||| |||||||||||||| |||| || |||||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |
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| T |
11235940 |
ttttcgtcaccaccaccaccaacttccggtcaccataacttttccgtccggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctc |
11236039 |
T |
|
| Q |
137 |
tacaaaagccctcaatttatttttagattggagaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaa |
236 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11236040 |
tacaaaagccctcaatttatttttagattgaagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaa |
11236139 |
T |
|
| Q |
237 |
accaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatg |
286 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11236140 |
accaaacccaccatattcttcctcgtgatgtcagcaacaaaacccctatg |
11236189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 52610140 - 52610389
Alignment:
| Q |
40 |
ttttcgttaccaccaccaccaagttccagttaccataactttttcatccggcctcctttaaaatccccgccatcaccattgaattcctctctt---cctc |
136 |
Q |
| |
|
||||||| |||||||||||||| |||| || | ||||| |||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
52610140 |
ttttcgtcaccaccaccaccaacttccggtcaacataaattttccgtccggcctcctttaaaatccccgccaccaccattgaattcctctcttcttcctc |
52610239 |
T |
|
| Q |
137 |
tacaaaagccctcaatttatttttagattggagaagtttaatattcgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaa |
236 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
52610240 |
tacaaaagccctcaatttatttatagattggagaagtttaatttttgagatctcccccttctttcttgttttccggccaccgtgagttgccatttggaaa |
52610339 |
T |
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| Q |
237 |
accaaacccaccatattcttcctcatgatgtcagcaacaaaacccctatg |
286 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52610340 |
accaaacccaccatattctttctcatgatgtcagcaacaaaacccctatg |
52610389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 22627909 - 22627862
Alignment:
| Q |
131 |
ttcctctacaaaagccctcaatttatttttagattggagaagtttaat |
178 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
22627909 |
ttcctctacaaaagcccgcaatttatttctagattggagaagtttaat |
22627862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 3860 - 3814
Alignment:
| Q |
129 |
tcttcctctacaaaagccctcaatttatttttagattggagaagttt |
175 |
Q |
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||||||||| |||||||||||||||||||| |||||||| |||||| |
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| T |
3860 |
tcttcctcttcaaaagccctcaatttatttggagattggaaaagttt |
3814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 22485453 - 22485499
Alignment:
| Q |
129 |
tcttcctctacaaaagccctcaatttatttttagattggagaagttt |
175 |
Q |
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||||||||| ||||||||||||||||||| ||||||||| |||||| |
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| T |
22485453 |
tcttcctcttcaaaagccctcaatttattggtagattggaaaagttt |
22485499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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