View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_high_22 (Length: 280)
Name: NF20204_high_22
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_22 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 11785639 - 11785904
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
11785639 |
agaattggcactggaatttttctatctatattcacagtagtggttgcagcctttgttgagatgaaaagactaaagatagcacaagagcatggtcttgttg |
11785738 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785739 |
atgatccaaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
11785838 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785839 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
11785904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 11789226 - 11789491
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
11789226 |
agaattggcactggaatttttctatctatattcacagtagtacttgcagcctttgttgagatgaaaagactaaagatagcacaagagcatggtcttgttg |
11789325 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
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||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||| |
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| T |
11789326 |
atgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagaggtttttactatggttggtcttcagga |
11789425 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11789426 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
11789491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 11801393 - 11801658
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
11801393 |
agaattggcactggaatttttctatctatattcacagtagtacttgcagcctttgttgagatgaaaagactaaagatagcacaagagcatggtcttgttg |
11801492 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||| |
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| T |
11801493 |
atgatccaaacgcaattgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagaggtttttactatggttggtcttcagga |
11801592 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11801593 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
11801658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 11699398 - 11699663
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
11699398 |
agaattggcactggaatttttctatctatattcacagtagtacttgcagcctttgttgagaataaaagactaaaagtagcacaagagcatggtcttgttg |
11699497 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||| || |||||||||||||| || |||||| ||||||| |
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| T |
11699498 |
atgatcctaatgcaactgttccaatgagtatagggtggttgattcctcagtatgttttgtttggtgtttctgaggtttttaccatggttggtcttcagga |
11699597 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11699598 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
11699663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 11678213 - 11678476
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || | ||| |||||||||||||||||||||||||||| || |||||||||| ||||| |||||| |
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| T |
11678213 |
agaattggcactggaatttttatatcgataatcacggtaacatttgcagcctttgttgagatgaaaagactaaaaatagcacaagaatatggtattgttg |
11678312 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||| |
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| T |
11678313 |
atgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagaggtttttactatggttggtcttcagga |
11678412 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11678413 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtatt |
11678476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 11686492 - 11686755
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || | ||| |||||||||||||||||||||||||||| || |||||||||| ||||| |||||| |
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| T |
11686492 |
agaattggcactggaatttttatatcgataatcacggtaacatttgcagcctttgttgagatgaaaagactaaaaatagcacaagaatatggtattgttg |
11686591 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||| |
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| T |
11686592 |
atgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttcagaggtttttactatggttggtcttcagga |
11686691 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11686692 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtatt |
11686755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 11708851 - 11709114
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||| |||||| | || |||||||| | |||||||||||| |
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|
| T |
11708851 |
agaattggcactggaatttttatatcaatattcatggtagtatttgcagcctttgttgagactaaaagattaaaaatagcacaaaaatatggtcttgttg |
11708950 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||||| |
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| T |
11708951 |
atgatcctaatgcaactgtaccaatgagtatatggtggttggttcctcaatactttttgtttggagtttctgaggtttttacaatggttggtcttcagga |
11709050 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtatt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11709051 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggactggcactctatttgagtatt |
11709114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 11792725 - 11792798
Alignment:
| Q |
198 |
gttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11792725 |
gttcaggaatttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
11792798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 6 - 271
Target Start/End: Original strand, 20641 - 20906
Alignment:
| Q |
6 |
agaattggcactggaatttttctatctatattcgcagtagtggttgcagcctttgttgagatgaaaagactgaaggtagcacaagagcatggtcttgttg |
105 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||| || ||||||||||||||||||| |||||||| ||| |||||||||||||| |||||| || |
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|
| T |
20641 |
agaattggcactggaattttcatatcaatatttacagtggtatttgcagcctttgttgagattaaaagactaaagatagcacaagagcatagtcttgatg |
20740 |
T |
|
| Q |
106 |
atgatcctaatgcaactgttccaatgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcagga |
205 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||||| || |||||| ||||||| |
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| T |
20741 |
atgatccaaatgcaactgtaccaatgagtatatggtggttgattcctcaatactttttgtttggtgtttcagaggtttttaccatggttggtcttcagga |
20840 |
T |
|
| Q |
206 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20841 |
atttttctatgatcaagtcccaaatgaactaagaagcatgggacttgcactctatttgagtattat |
20906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 4977 - 4837
Alignment:
| Q |
129 |
atgagtatatggtggttggttcctcaatactttttgtttggagtatctgaggtttttactattgttggtgttcaggaatttttctatgatcaagtcccaa |
228 |
Q |
| |
|
||||| || ||||||||| |||||||||| | ||||||||||||||||| || ||||| || || ||| | || ||||||||||||||||| ||||| |
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|
| T |
4977 |
atgagcatctggtggttgattcctcaatatgtcttgtttggagtatctgatgtctttacaatggtaggtctgcaagaatttttctatgatcaggtcccgg |
4878 |
T |
|
| Q |
229 |
atgaactaagaagcatgggacttgcactctatttgagtatt |
269 |
Q |
| |
|
||||| ||||||| |||| ||| | |||||||| |||||| |
|
|
| T |
4877 |
atgaattaagaagtgtgggtctttccctctatttaagtatt |
4837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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