View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_high_25 (Length: 267)
Name: NF20204_high_25
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 32613493 - 32613323
Alignment:
| Q |
1 |
cttcaagtttattccaccgctctgcccgcaccaaaacatttccacacaccctccatcacaaccagacccattccaaacacaccatattcatccataaaaa |
100 |
Q |
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| T |
32613493 |
cttcaagtttattccaccgctctgtccacaccaaaacatttccacacaccctccatcacaaccagacccattccaaacacaccatattcatccataaaaa |
32613394 |
T |
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| Q |
101 |
catcaccaccttcatgtttcaatttcttgcaagaagcttcacgcatgaaacctattgggagacaattatcc |
171 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32613393 |
catcaccaccttcatgtttcaatttcttgcaagaagcttcacgcatgaaacctattgggagacaattatcc |
32613323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 32613293 - 32613243
Alignment:
| Q |
201 |
ctccacatgacacttgtctaaaactagatttgtaataaaatgtcaagttta |
251 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
32613293 |
ctccacatgacacttgtctaaaactaaatttgtaataaaatgtctagttta |
32613243 |
T |
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