View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_high_29 (Length: 251)
Name: NF20204_high_29
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 42897292 - 42897088
Alignment:
| Q |
18 |
gttataacatgttccatggatctaatgtttcttgttatattacaagtcttgctttttctgggatctgcagacaagtctaacccnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
42897292 |
gttataacatattccatggatctaatgtttcttgttatattacaagtcttgctttttctaggatctgcagacaagtctaacccaaaacaaaaaaggaaaa |
42897193 |
T |
|
| Q |
118 |
nnngtggactttatcacagacaaaaccattgagtagtgagagaatgaacagaacaaattgatataaaactcatgaatagtttttgaaataattgttctag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42897192 |
aaagtggactttatcacagacaaaaccattgagtagtgagagaatgaacagaacaaattgatataaaactcatgaatagtttttgaaataattgttctag |
42897093 |
T |
|
| Q |
218 |
tagat |
222 |
Q |
| |
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||||| |
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| T |
42897092 |
tagat |
42897088 |
T |
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