View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_high_38 (Length: 201)

Name: NF20204_high_38
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_high_38
NF20204_high_38
[»] chr6 (2 HSPs)
chr6 (23-109)||(11050566-11050652)
chr6 (23-184)||(11019552-11019712)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 6e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 11050566 - 11050652
Alignment:
Q  23 ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11050566 ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatat 11050652  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 11019552 - 11019712
Alignment:
Q  23 ttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcatatgccgtatcnnnnn 122  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||         
T  11019552 ttataaatatgtgtattatattgagatgtgaatcaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgcatcatatgtcgtatcttttt 11019651  T
Q  123 nnggaattattttctgatnnnnnnnntatgtgtggctgctctttgcttcatgacataatagt 184  Q
       |||||||| ||||||        |||||||||||||||||||||| |||||||||||||    
T  11019652 tcagaattattatctgat-aaaaaaatatgtgtggctgctctttgctttatgacataatagt 11019712  T

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