View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_high_4 (Length: 558)
Name: NF20204_high_4
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_high_4 |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 14 - 542
Target Start/End: Complemental strand, 23458690 - 23458162
Alignment:
| Q |
14 |
attattcttgcaaaagagtgagttagtggaaagagtagaaggtttgatggaggaaaataccaagattaaaataaaactaaacatcaaagaatacattgtc |
113 |
Q |
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| T |
23458690 |
attattcttgcaaaagagtgagttagtggaaagagtagaaggtttgatggaggaaaataccaagattaaaataaaactaaacatcaaagaagacattgtc |
23458591 |
T |
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| Q |
114 |
gaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaag |
213 |
Q |
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| T |
23458590 |
gaaaagaaggagcttgaaactaaagatttgacggctgaaattgaagagttgaaggctaaaattgaagaatcgagggatgaaattccaatgcaccacaaag |
23458491 |
T |
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| Q |
214 |
ctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgtttt |
313 |
Q |
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| T |
23458490 |
ctgggtttgataaagccctaaagaaagtttcagtttctatatctgaaattaaaccatgaccattttaattggatcggagaaaattattcatctatgtttt |
23458391 |
T |
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| Q |
314 |
ggatagaaagtttaccttgatgaaaggtattgcaagggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggttt |
413 |
Q |
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| T |
23458390 |
ggatagaaagtttaccttgatgaaaggtactgcaatggattaacgccttaaatttttgtagttgaagccttttgaactctttgtgaacttgtatgggttt |
23458291 |
T |
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| Q |
414 |
cattttgggatcatttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatgtttatctaattatattttcaaactct |
513 |
Q |
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| T |
23458290 |
cattttgggatcctttgtgttttgtttttagatttgggattatatatcgtatctatgaactcctatttagtatgtttatctaattatattttcaaactct |
23458191 |
T |
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| Q |
514 |
tgttcaattattgtttgtatggttagcaa |
542 |
Q |
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| T |
23458190 |
tgttcaattattgtttgtatggttagcaa |
23458162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 267
Target Start/End: Complemental strand, 23462431 - 23462316
Alignment:
| Q |
152 |
aattgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataaagccctaaagaaagtttcagtttct |
251 |
Q |
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| T |
23462431 |
aattgaagatttgaaagctgaaattgaagaggtgaaggctgaaattccagtgcagtacaatgctgggtttgataaggcagtcaagcaaattttagtttca |
23462332 |
T |
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| Q |
252 |
atatctgaaattaaac |
267 |
Q |
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| T |
23462331 |
atatctgaacttaaac |
23462316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 74638 - 74565
Alignment:
| Q |
153 |
attgaagagttgaaggctaaaattgaagaattgagggatgaaattccaatgcaccacaaagctgggtttgataa |
226 |
Q |
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| T |
74638 |
attgaagatttgaaagctgaaattgaagaggtgaagactgaaattccagtgcagcacaatgctgggtttgataa |
74565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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