View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20204_low_1 (Length: 735)

Name: NF20204_low_1
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20204_low_1
NF20204_low_1
[»] chr5 (1 HSPs)
chr5 (16-716)||(17836558-17837270)


Alignment Details
Target: chr5 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 716
Target Start/End: Complemental strand, 17837270 - 17836558
Alignment:
Q  16 caaaggtggtagagtgtgaaaatcatgaagagggtattgataaagaaaaagaagatcaacctgttgaagaagatagtgggaaggaaaatgaaggagtaac 115  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || ||||| || ||||| |||| |||||||||||||| ||||     
T  17837270 caaaggtggttgagtgtgaaattcatgaagagggtattgataaagaaaaagaagatgaatctgttcaacaagatggtggtaaggaaaatgaaggggtaag 17837171  T
Q  116 tgaaaggattgtttccatggagaatgatctaactgttcatggaattgaaatgaagagttttgtttgcttggaaaatggtcatgatctatgtcatgataat 215  Q
    ||||||| ||||||| ||||||||||||| || |||| ||| ||| ||||  |||||||||||||||||| |||||||| ||||||||||||||||| ||    
T  17837170 tgaaaggtttgtttcaatggagaatgatccaaatgttgatgaaatggaaacaaagagttttgtttgcttgaaaaatggttatgatctatgtcatgatcat 17837071  T
Q  216 atnnnnnnnnnnnnnnnnnnnnnnnnnataatagagcctgccatagtggagaataactctaatgttcatgaagatggaagaatatttgatggaatggaaa 315  Q
    ||                         |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17837070 atgaagatagaagagaaagaagaagaaataatagagcatgccatagtggagaataactctaatgttcatgaagatggaagaatatttgatggaatggaaa 17836971  T
Q  316 cagagtactctgttttcatggagaatgtctctgatgttattgaagatggtgagaaaatagttgaaaaggatatagaggaatctgttttcaaggatgatga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17836970 cagagtactctgttttcatggagaatgtctctgatgttattgaagatggtgagaaaatagttgaaaaggatatagaggaatctgttttcaaggatgatga 17836871  T
Q  416 ggataatcttcatgaggttagcaagaaaataggtggaattgaaacaaagatcacagttttcggtgacgatgatgataataaaatagaagaagaaac---- 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||        
T  17836870 ggataatcttcatgaggttagcaagaaaataggtggaattgaaacaatgatcacagttttcggtaacgacgatgataataaaatagaagaagaaacagag 17836771  T
Q  512 --------agaggaatctgtttttgtggagagtgaaactataaaaacaacaactagtaggtatgaatacttctcagaaaaagatataagttgctttgtgg 603  Q
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17836770 caagaaacagaggactctgtttttgtggagagtgaaactataaaaacaaccactagtaggtatgaatacttctcagaaaaagatataagttgctttgtgg 17836671  T
Q  604 aagaaccaacaacactccgattcagttttcgagaatattacacgagtcctgatgtttcaaccgtttcccaaaatgcaaacaaagagttttcaaagcttga 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17836670 aagaaccaacaacactccgattcagttttcgagaatattacacgagtcctgatgtttcaaccatttcccaaaatgcaaacaaagagttttcaaagcttga 17836571  T
Q  704 ttcagagaaagac 716  Q
    |||||||||||||    
T  17836570 ttcagagaaagac 17836558  T

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