View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_10 (Length: 413)
Name: NF20204_low_10
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 40382121 - 40381743
Alignment:
| Q |
16 |
atatcaccgagtttgattctttgattaacagtggagacctctttacattgtttaaactattaggtcaagtccactaagagacaagttagcatgaatgctt |
115 |
Q |
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| T |
40382121 |
atatcaccgagtttgattctttgattaatagtggagacctctttacattgtttaaactattaggtcaagtccactaagagacaagttagcatgaatgctt |
40382022 |
T |
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| Q |
116 |
attagctagctaagaggactatttttaatctttgttcataacttttattattgatgttcctacttatattttgagcatttgcattggttttactcaaccc |
215 |
Q |
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| T |
40382021 |
attagctagctaagaggactatttttaatctttgttcataacttttattattgatgttcttact--tattttgagcatttgcattggttttactcaaccc |
40381924 |
T |
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| Q |
216 |
cnnnnnnnntctgatattggacaagagatttttattctatctttgatgatttacaaattaaagaactagtaattgtaataacatatctgactgattcatc |
315 |
Q |
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| T |
40381923 |
caaaaaaaatctgatattggacaagagatttttattctatctttgatgatttacaaattaaagaactagtaattgtaataacatatctgactgattcatc |
40381824 |
T |
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| Q |
316 |
atacacaaaaaacatcaatgatttgctcacttttcttggtgtgtctcacaaattatttctcaagtacttgcatcttcaggt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40381823 |
atacacaaaaaacatcaatgatttgctcacttttcttggtgtgtttcacaaattatttctcaagtacttgcatcttcaggt |
40381743 |
T |
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