View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20204_low_11 (Length: 410)
Name: NF20204_low_11
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 40771738 - 40772120
Alignment:
| Q |
10 |
aggagcagagacaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggttagtc |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40771738 |
aggagcaaagacaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggttagtc |
40771837 |
T |
|
| Q |
110 |
ggagttaagcaacaacccttacgtcgtacagttcgggcatgtgaaagtgaccgataaactctaagaaaagccgtgatgtctacaacgtgtcaatacaggg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40771838 |
ggagttaagcaacaacccttacgtcgtacagttcgggcatgtgaaagtgaccgataaactctaagaaaagccgtgatgtctacaacgtgtcaatacaggg |
40771937 |
T |
|
| Q |
210 |
aatcaacccaaacattcaaatctctctgtatgttatatgaattctcaagaaaatttagtgatgatagcaaagaagaaagatgagtggtttttgatgaaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||| | | || | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
40771938 |
aatcaacccaaacattcaaatctctct-tttattttctgaattctcaagaaaatttagtgatgatagcaaagaagaaagatgaattgtttttgatgaaga |
40772036 |
T |
|
| Q |
310 |
aaatgaggtggagattgtaaagtgttatatagataagagaaaatgaaaagagattaaggaaatgtggttgtgaatgagtttggt |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40772037 |
aaatgaggtggagattgtaaagtgttatatagataagagaaaatgaaaagagattaaggaaatgtggttgtgaatgagtttggt |
40772120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 21013734 - 21013819
Alignment:
| Q |
20 |
acaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggtt |
105 |
Q |
| |
|
||||||||||| || || ||||| ||||| || || ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
21013734 |
acaccaccaccagcaagaaagaggagatcagaaggactaccaccttcagaaggaagagcaccacgcccgccgtgcggcgaagggtt |
21013819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University