View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20204_low_12 (Length: 410)
Name: NF20204_low_12
Description: NF20204
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20204_low_12 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 113 - 410
Target Start/End: Complemental strand, 31733672 - 31733375
Alignment:
| Q |
113 |
caaaatgggcgaagtttccttgttggacacatatctaacaccaatactcttagcctcttagcatactctcagtacgtatctcaaaagtatatgatgttct |
212 |
Q |
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| T |
31733672 |
caaaatgggcgaagtttccatgttggacacatatctaacaccaatactcttagcctcttaggatactctcagtacgtatctcaaaagtatatgatgttct |
31733573 |
T |
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| Q |
213 |
tcaattatttnnnnnnnnttgattttaggatacatttgggatacgttgtggatgcaacgtggcatggccaaatgtctttgttgaaagaaaagaaactctt |
312 |
Q |
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| T |
31733572 |
tcaattatttaaaaaaaaatgattttaggatacatttgggatacgttgtggatgcaacgtggcatggccaaatgtctttgttgaaagaaaagaaactctt |
31733473 |
T |
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| Q |
313 |
ttccccgtaaacaaagagaaatcccacagtccactttcttttttgttattacaaccaaggtagtcagaatcgagatcataggtaggatcaagaagggg |
410 |
Q |
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| T |
31733472 |
ttccccgtaaacaaagagaaatcccacagtccactttcttttttgttattacaaccaagatagtcagaatcgagatcataggcaggatcgagaagggg |
31733375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 31736433 - 31736045
Alignment:
| Q |
16 |
agagagatgtgaaaaagccaagttaaacatacatttataatatgaacaacnnnnnnnnnnnnntatttcaaactctagctatgaagccaggatactccaa |
115 |
Q |
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| T |
31736433 |
agagagatgtgaaaaagccaagttaaacagacatttataatatgaactacaaaaatgaaaaa-tatttcaaactctagctatgaagccagggtactccaa |
31736335 |
T |
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| Q |
116 |
aatgggcgaagtttccttgttggacacatatctaacaccaatactcttagcctcttagcatactctcagtacgtatctcaaaagtatatgatgttcttca |
215 |
Q |
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| T |
31736334 |
aatgggcgacgttaccatgttgaacacatatcaaacatcaatactcttagg--------atactctcagtatgtatctcaaaagtatatgatgttcttca |
31736243 |
T |
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| Q |
216 |
attatttnnnnnnnn--ttgattttaggatacatttgggatacgttgtggatgcaacgtggcatggccaaat--gtctttgttgaaagaaaagaaactct |
311 |
Q |
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| T |
31736242 |
gttattaaaaaaaaaaattggttttttgatacatttgggatacattgtggatgcaacgtggcatggtcaaatatgtctctgttgaaagaaaagaaactct |
31736143 |
T |
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| Q |
312 |
tttccccgtaaacaaagagaaatcccacagtccactttcttttttgttattacaaccaaggtagtcagaatcgagatcataggtaggatcaagaaggg |
409 |
Q |
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| T |
31736142 |
ttcccccgtaaacaacgagaagccccacaatccactttcttttatgttattacaaccaaggtagtcagaatcgagttcataggcaggaccaagaaggg |
31736045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 158 - 410
Target Start/End: Complemental strand, 6498618 - 6498366
Alignment:
| Q |
158 |
actcttagcctcttagcatactctcagtacgtatctcaaaagtatatgatgttcttcaattatttnnnnnnnnttgattttaggatacatttgggatacg |
257 |
Q |
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| T |
6498618 |
actcttagcctcttaggatactctcagtacgtatctcaaaagtatatgatgttcttcaattatttaaaaaaaattgattttaggatacatttgggatacg |
6498519 |
T |
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| Q |
258 |
ttgtggatgcaacgtggcatggccaaatgtctttgttgaaagaaaagaaactcttttccccgtaaacaaagagaaatcccacagtccactttcttttttg |
357 |
Q |
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| T |
6498518 |
ttgtggatgcaacgtggcatggccaaatgtctttgttgaaagaaaagaaactcttttccccgtaaacaaagagaaagcccacagtccacgttcttttttg |
6498419 |
T |
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| Q |
358 |
ttattacaaccaaggtagtcagaatcgagatcataggtaggatcaagaagggg |
410 |
Q |
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| T |
6498418 |
ttattacaaccaaggtagtcagaatcgagatcataggcaggatcaagaagggg |
6498366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 6498977 - 6498823
Alignment:
| Q |
10 |
gcacagagagagatgtgaaaaagccaagttaaacatacatttataatatgaacaacnnnnnnnnnnnnntatttcaaactctagctatgaagccaggata |
109 |
Q |
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| T |
6498977 |
gcacagagagagatgtgaaaaagccaagttaaacatacatttataatatgaacaacaaaaacgaaaaa-tatttcaaactctagctatgaagccaggata |
6498879 |
T |
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| Q |
110 |
ctccaaaatgggcgaagtttccttgttggacacatatctaacaccaatactcttag |
165 |
Q |
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| T |
6498878 |
ctccaaaatgggcgaagtttccatgttggacacatatataacaccaatactcttag |
6498823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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